CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 2 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 77/201 (38.31%), Postives = 116/201 (57.71%), Query Frame = 1
Query:   22 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIA--SMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAF-AIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSV 615
            +S  IS +  + W PD+YEGSPTPV AFLS+  K +  A   R+ +      + Q  F F ++A  SM+LG + A+AQT +KRLLA+SSIG  G++  G    T  G  S++  + +Y  M +  F  ++L   +T    I++   L + +P+  +  S+ + S  GIPPLAGF  K YLF+A    G Y+L  +G++TSV
Sbjct:  225 ISFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPLVSEQWHFVFTALAILSMVLGNVVALAQTSMKRLLAYSSIGQAGFVMIGLLANTEAGYASMIFYLLVYLFMNLGGFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYWLVLLGLITSV 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_SISMO (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisyrinchium montanum GN=ndhB PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 76/199 (38.19%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFAIVLALR-QTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA +++   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVSMGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_SPIOL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Spinacia oleracea GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 78/193 (40.41%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKIYLFWCGWQAGLYFLVLIGLLTSVL 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_CYCTA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cycas taitungensis GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 81/199 (40.70%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL+  + W PD+YEGSPTPV AFLS+  K++ SA  +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SS+G +GYI  G   G  + G  S++  +  Y  M +  FA IVL   +T    I D   L   +P SA + ++ + S  GIPPLAGF  K YLF+     G+Y L  +G + SVI
Sbjct:  226 LSLVPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDLIFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSMGQIGYIIIGIIAGDSKNGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGSYLLVSIGPLMSVI 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_SPIOL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Spinacia oleracea GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 78/193 (40.41%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKIYLFWCGWQAGLYFLVLIGLLTSVL 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C1_CYCTA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cycas taitungensis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 81/199 (40.70%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL+  + W PD+YEGSPTPV AFLS+  K++ SA  +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SS+G +GYI  G   G  + G  S++  +  Y  M +  FA IVL   +T    I D   L   +P SA + ++ + S  GIPPLAGF  K YLF+     G+Y L  +G + SVI
Sbjct:  226 LSLVPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDLIFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSMGQIGYIIIGIIAGDSKNGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFSAFSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGSYLLVSIGPLMSVI 424          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUON2_SOLUE (NADH-quinone oxidoreductase subunit N 2 OS=Solibacter usitatus (strain Ellin6076) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 75/195 (38.46%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRV--KYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVV 606
            +S +  +MWAPD YEG+PT VTA+LS+A K +  A + R+F+    S  A  + +  F +I ++ +G LAA+ QT +KRLLA+SSI H GY+  G   G   GI+ + + + +Y  M + AF +++A+R+  +  + + DL  L   +P  A    I + S AGIPP AGF  K+Y+F A +  G   LA V  +
Sbjct:  234 VSAVPFHMWAPDAYEGAPTTVTAYLSVASKAASIAFLLRIFLGPLASARAVWEPLLAFIAIITLTIGNLAAINQTNIKRLLAYSSISHAGYMLLGLVAGNDTGIKGIAVYVMVYTFMNLGAFLVIIAMRRASIIGEDLDDLAGLVHKSPGYAFLMLIFLLSLAGIPPTAGFLGKYYIFLALIQTGHTGLAIVATL 428          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C_PROMP (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 75/198 (37.88%), Postives = 114/198 (57.58%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            I+ +  + W PD+YEGSPTPV AFLS+  K +  A   R+    + S+    + +F   +I SM LG + A+AQT +KR+LA+SSIG  G++  G   GT +G+ S ++ +  Y  M + AF+ ++L   +T    I D   L + +P+  +  S+ + S  G+PP+ GF  K YLFFA      Y L  VG++TSVI
Sbjct:  223 IAAVPFHQWTPDVYEGSPTPVVAFLSVGSKTAGFAFAIRILSTTFSSFDEQWKLLFTILAILSMALGNIVALAQTSMKRMLAYSSIGQAGFVMIGIVSGTQDGLSSAVLYLAAYLFMNLGAFSCVILFSLRTGSDRITDYSGLYQKDPLITLGLSLCLLSLGGLPPMLGFFGKIYLFFAGWANHQYLLVVVGLITSVI 420          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_TOBAC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tabacum GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 79/199 (39.70%), Postives = 117/199 (58.79%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            +SL   + W PD+YEGSPTPV AFLS+  K++  A  +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAALALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU2C2_DAUCA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Daucus carota GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 78/193 (40.41%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   52 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIA--SMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 618
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +      ++A  SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLETLAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVLIGLLTSVV 442          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU2C_TRIEI4.083e-3338.31NAD(P)H-quinone oxidoreductase subunit 2 OS=Tricho... [more]
NU2C_SISMO4.083e-3338.19NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_SPIOL4.083e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_CYCTA4.083e-3340.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_SPIOL4.083e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_CYCTA4.083e-3340.70NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON2_SOLUE5.332e-3338.46NADH-quinone oxidoreductase subunit N 2 OS=Solibac... [more]
NU2C_PROMP5.332e-3337.88NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C2_TOBAC5.332e-3339.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_DAUCA5.332e-3340.41NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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