DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_BOTFB (ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) GN=fal1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.928e-46
Identity = 88/106 (83.02%), Postives = 99/106 (93.40%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHG+MPQKERD+IM +FR G +RVLI+TDVWARG+DVQQVSLVINYDLP NRE YIHRIGRSGRFGRKGVAINFV ++D++ILRDIE YYSTQIDEMPMNVADL+
Sbjct:  293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.130e-46
Identity = 89/105 (84.76%), Postives = 97/105 (92.38%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            SMHG+M QKERDAIM EFR G +RVLITTDVWARG+DVQQVSLVINYDLP +RE Y+HRIGRSGRFGRKGVAINFV  DD++ILRDIEQYYSTQIDEMPMNVA+L
Sbjct:  291 SMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIEQYYSTQIDEMPMNVAEL 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 6.699e-46
Identity = 87/106 (82.08%), Postives = 98/106 (92.45%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDMPQ+ERD+IM +FR   +RVLI+TDVWARG+DVQQVSLVINYDLP+NRE YIHRIGRSGRFGRKGVAINFV  +D++ILRDIE YYSTQIDEMPMNVADL+
Sbjct:  268 SMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILRDIELYYSTQIDEMPMNVADLL 373          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.143e-45
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDM QK+RD+IM EFRSG +RVLI+TDVWARG+DVQQVSLVINYDLP NRE YIHRIGRSGRFGRKGVAINF  NDDI  LRDIEQYYSTQIDEMP+NV D++
Sbjct:  292 SMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDMM 397          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.815e-44
Identity = 84/101 (83.17%), Postives = 95/101 (94.06%), Query Frame = -1
Query:  332 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 634
            SMHG+MPQKERD+IM +FR G +RVLI+TDVWARG+DVQQVSLVINYDLP+NRE YIHRIGRSGRFGRKGVAINFV ++D++ILRDIE YYSTQIDEMPMN
Sbjct:  293 SMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMN 393          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.397e-43
Identity = 84/106 (79.25%), Postives = 98/106 (92.45%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q +R+ IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP+NRE YIHRIGR GRFGRKGVAINFV +DD+++LRDIEQ+YSTQIDEMP+NVADLI
Sbjct:  306 AMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIEQFYSTQIDEMPLNVADLI 411          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.017e-42
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDM QKER+ I+  FRSG  RVLITTD+ ARG+DVQQVSLVINYDLP +RE YIHRIGRSGRFGRKGVAINFVKN DI+ILRDIEQ+YSTQIDEMP+N A +I
Sbjct:  300 SMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.634e-42
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHG+M QKERD +M EFR G++RVLITTDVWARG+D+  +SLVINYDLP NRE YIHRIGRSGRFGRKGVAINFV  DD++ LRDIEQ+YSTQIDEMP+ + D++
Sbjct:  292 SMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.494e-42
Identity = 82/106 (77.36%), Postives = 95/106 (89.62%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q +RD IM EFRSG++RVLI TD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  DD++++R+IEQ+YSTQI+EMPMNVADLI
Sbjct:  316 AMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.494e-42
Identity = 82/106 (77.36%), Postives = 95/106 (89.62%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q +RD IM EFRSG++RVLI TD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  DD++++R+IEQ+YSTQI+EMPMNVADLI
Sbjct:  293 AMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_BOTFB3.928e-4683.02ATP-dependent RNA helicase fal1 OS=Botryotinia fuc... [more]
FAL1_CRYNE5.130e-4684.76ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_PHANO6.699e-4682.08ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
FAL1_YARLI1.143e-4583.02ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_AJECN2.815e-4483.17ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
IF4A_USTMA1.397e-4379.25ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_DICDI2.017e-4280.19Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_USTMA2.634e-4274.53ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A_ASPOR4.494e-4277.36ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_ASPCL4.494e-4277.36ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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