DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  303 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 408
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            ++HGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D +ILRDIE +Y+T ++EMPMNVADLI
Sbjct:  302 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHG+M Q +RD IM EFRSG++RVLI TD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  DD++++R+IEQ+YSTQI+EMPMNVADLI
Sbjct:  293 AMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q +RD IM EFRSG++RVLI TD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  +D++++R+IEQ+YSTQI+EMPMNVADLI
Sbjct:  293 AMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1 
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  293 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 398
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_RAT1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_MACFA1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A2_HUMAN1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_CHICK1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A2_BOVIN1.001e-4177.36Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
IF4A_COCIM1.307e-4176.42ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A_SCLS12.913e-4176.42ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A1_RABIT1.107e-4076.42Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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