DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 72/105 (68.57%), Postives = 90/105 (85.71%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            ++H D+PQ ERD IM EFRSG++R+LI TD+ ARG+DVQQVSLVINYDLP+N+E YIHRIGR GRFGRKGVAINFV   D+ ++R+IEQ+YSTQI+EMP ++  L
Sbjct:  291 AIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.424e-37
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q+ERDAIM +FRSG +RVLI+TDVWARG+DVQQ+SLVINYDLP ++E YIHRIGRSGRFGRKG AIN +   D   L+ +E+YYST+I EMP NV D++
Sbjct:  294 AMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKALEKYYSTKIKEMPSNVNDVM 399          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 72/106 (67.92%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHG+  Q +RD IM  FR+G++R+LITTD+ ARG+DVQQVSLVIN+DLP+NRE YIHRIGR GRFGRKGVAINFV ++D  +L+++E++YST+I EMP N+ADLI
Sbjct:  290 SMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFYSTEIVEMPTNIADLI 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            ++H D+PQ +RD IM EFRSG++R+LI+TD+ ARG+DVQQVSLVINYDLP N+E YIHRIGR GRFGRKGVAINFV + D+ ++R+IE++YSTQI+EMP ++  L
Sbjct:  291 AIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.266e-36
Identity = 71/105 (67.62%), Postives = 91/105 (86.67%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            ++H D+PQ ERD IM EFRSG++R+LI+TD+ ARG+DVQQVSLVINYDLP N+E YIHRIGR GRFGRKGVAINFV + D+ ++R+IE++YSTQI+EMP ++  L
Sbjct:  291 AIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 71/105 (67.62%), Postives = 90/105 (85.71%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            ++H D+PQ ERD IM EFRSG++R+LI+TD+ ARG+DVQQVSLVINYDLP N+E YIHRIGR GRFGRKGVAINFV + D+ ++R+IE++YSTQI EMP ++  L
Sbjct:  291 AIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEKFYSTQITEMPADIGSL 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 69/105 (65.71%), Postives = 92/105 (87.62%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            +++ D+PQ +RD IM EFR+G++R+LI+TD+ ARG+DVQQVSLVINYDLPNN+E YIHRIGR GRFGRKGVAIN V + D+  +R++E++YSTQI+E+P N+ADL
Sbjct:  290 AIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMRELERFYSTQIEELPANIADL 394          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            SMHGDM Q+ERD +M +FR+G +RVLI+TDVWARG+DVQQVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+   D+  LR+IE++YS +I+ MP N A+L
Sbjct:  294 SMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMPANFAEL 398          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            SMHGDM Q+ERD +M +FR+G +RVLI+TDVWARG+DVQQVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+   D+  LR+IE++YS +I+ MP N A+L
Sbjct:  294 SMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMPANFAEL 398          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413          
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICST3.333e-3768.57ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_LODEL7.424e-3768.87ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
IF4A_YARLI9.696e-3767.92ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_DEBHA9.696e-3766.67ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_CANAL1.266e-3667.62ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_LODEL1.654e-3667.62ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_ASHGO2.160e-3665.71ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
FAL1_YEAST2.160e-3669.52ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS72.160e-3669.52ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF410_TOBAC3.685e-3670.19Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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