DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGD  QKERD IM +FRS  +RVLI +DVWARG+DVQ VS VINYD+PNN ELYIHRIGR+GRFGR+GVAINFVK+ D+K L+DIE++Y T+I EMP   ADL+
Sbjct:  290 SMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMP---ADLV 392          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 68/105 (64.76%), Postives = 93/105 (88.57%), Query Frame = -1
Query:  320 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 634
            +++ D+ Q+ERD IM EFRSG++R+LI+TD+ ARG+DVQQVSLVINYDLP+N+E YIHRIGR GRFGRKG+AINFV N DI  +R++E++YSTQI+E+P ++++L
Sbjct:  290 AIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELERFYSTQIEELPSSISEL 394          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGV+INFV +DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPANVADLL 413          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNVVIEELPANVADLL 413          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 71/104 (68.27%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD +I+ D++++Y+  ++E+P NVADL+
Sbjct:  307 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYNVTVEELPANVADLL 410          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF415_TOBAC (Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.072e-35
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  317 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 628
            HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVIN+DLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPANVADLL 413          
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH34_ARATH4.812e-3670.75DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A_KLULA4.812e-3664.76ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A3_ORYSJ4.812e-3670.19Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A9_TOBAC6.285e-3669.23Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A7_TOBAC6.285e-3670.19Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF4A1_ORYSJ6.285e-3670.19Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF414_TOBAC6.285e-3670.19Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A_MAIZE8.209e-3668.27Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A8_TOBAC8.209e-3670.19Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF415_TOBAC1.072e-3569.23Eukaryotic initiation factor 4A-15 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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