DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  295 DSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            +S+ + H       ED   N    ++  A  D A     SF +L +   L  AC+ LGY  PTPIQ   IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+
Sbjct:   25 ESKKESHTPSPEPIEDTEDNRVIEETEEAEEDDAP---KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQ 127          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            SF +L +   L  AC+ LGY  PTPIQ   IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+
Sbjct:   57 SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQ 123          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  244 TKSLQQRSVPIVDNDHSDSELDQHEDYKPE-DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            T S+     P+ D     SEL   ED   + D+   S++  T S  +P         SF E +L   LL + ++L Y++PTPIQAA IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct:   51 TISISTSETPVSDV----SELSNKEDLSTKKDQSSASSSSSTSSSSSPPS-----VQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTL 160          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  238 KITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            K+ +   + + P+     + +E     D + E+E     +   +   A          +F +L ++  L  ACE L Y  PTPIQ   IP+AL GRDI G A TGSGKTAAFALP L+ LL +P+
Sbjct:    8 KVAQDTPRNTKPVAQEKPARAEPKPSSDEESEEE-----SATLEEPSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQ 127          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 609
            +F +L +   L  ACE LGY  PTPIQ   IPLAL  RDI G A TGSGKTAAFALP L+ LL +P
Sbjct:   91 TFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKP 156          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  265 SVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624
            ++ + D+D  D + D+    K +  DD       +S+F         + SF  L LS+ +L+     G+ +PTPIQ   IPL L G+D+ G A TGSGKTAAF LP LE+L     ++ A
Sbjct:   59 NLELSDDDDDDDDDDEGRKKKKKKTDD-----SVESYFGAPQTGKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGA 173          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  409 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +SF  LNLS+P +RA E +G+SK TP+QA  IP  + GRD+ G+A TGSGKT AF LPT+E L
Sbjct:   29 HSFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELL 91          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +F +L L  P+L A   LGY KP+PIQA CIP  L GRD+ G A TGSGKTAAF+LP L+ L
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +F +L L  P+L A   LGY KP+PIQA CIP  L GRD+ G A TGSGKTAAF+LP L+ L
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +F +L L  P+L A   LGY KP+PIQA CIP  L GRD+ G A TGSGKTAAF+LP L+ L
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RRP3_BOTFB7.746e-1545.28ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
RRP3_SCLS11.321e-1459.70ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_LODEL1.321e-1442.86ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
RRP3_GIBZE2.943e-1436.80ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]
RRP3_NEUCR5.020e-1460.61ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
DBP10_YARLI5.020e-1436.67ATP-dependent RNA helicase DBP10 OS=Yarrowia lipol... [more]
HAS1_CANGA6.557e-1458.73ATP-dependent RNA helicase HAS1 OS=Candida glabrat... [more]
DEAD_SHIFL6.557e-1459.68Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI6.557e-1459.68Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL66.557e-1459.68Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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