DN618439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15 Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 295 DSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 +S+ + H ED N ++ A D A SF +L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ Sbjct: 25 ESKKESHTPSPEPIEDTEDNRVIEETEEAEEDDAP---KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQ 127
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 SF +L + L AC+ LGY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+ Sbjct: 57 SFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQ 123
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 244 TKSLQQRSVPIVDNDHSDSELDQHEDYKPE-DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 T S+ P+ D SEL ED + D+ S++ T S +P SF E +L LL + ++L Y++PTPIQAA IP AL G+DI G A TGSGKTAAFA+P L+ L Sbjct: 51 TISISTSETPVSDV----SELSNKEDLSTKKDQSSASSSSSTSSSSSPPS-----VQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTL 160
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14 Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1 Query: 238 KITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 K+ + + + P+ + +E D + E+E + + A +F +L ++ L ACE L Y PTPIQ IP+AL GRDI G A TGSGKTAAFALP L+ LL +P+ Sbjct: 8 KVAQDTPRNTKPVAQEKPARAEPKPSSDEESEEE-----SATLEEPSAEETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQ 127
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14 Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 609 +F +L + L ACE LGY PTPIQ IPLAL RDI G A TGSGKTAAFALP L+ LL +P Sbjct: 91 TFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKP 156
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14 Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 265 SVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624 ++ + D+D D + D+ K + DD +S+F + SF L LS+ +L+ G+ +PTPIQ IPL L G+D+ G A TGSGKTAAF LP LE+L ++ A Sbjct: 59 NLELSDDDDDDDDDDEGRKKKKKKTDD-----SVESYFGAPQTGKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGA 173
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 409 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +SF LNLS+P +RA E +G+SK TP+QA IP + GRD+ G+A TGSGKT AF LPT+E L Sbjct: 29 HSFKSLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELL 91
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +F +L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF+LP L+ L Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +F +L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF+LP L+ L Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +F +L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF+LP L+ L Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bpback to top |