DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +F +L L  P+L A   LGY KP+PIQA CIP  L GRD+ G A TGSGKTAAF+LP L+ L
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 53/136 (38.97%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  247 KSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA----------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624
            K  +Q + P V   H+  E   +    P  E D  ++ +     APA   + HA          ++F EL LS+ L+  C++LG   PT +Q  CIP AL GRD+ G A TGSGKTAAFALP L RL   P  + A
Sbjct:   21 KKPKQEAEPQV---HTQPEEPPNPSPSPAIEPDLRDSDE-----APAAAVTEHAGDDAAAAAVPSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAA 148          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            +F +L ++  L  AC+ LG++KPT IQ   IPLAL GRDI G A TGSGKT AFALP L  LL  P+R+
Sbjct:   25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 93          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            +F +L ++  L  AC+ LG++KPT IQ   IPLAL GRDI G A TGSGKT AFALP L  LL  P+R+
Sbjct:   25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 93          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  283 NDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            +D S S+ + ++ +    + + +            D       SF EL +S+PL  AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL  P+
Sbjct:    2 SDSSSSDGEDNQKFLGNRKKNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ 111          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            +F +L ++  L  AC+ LG++KPT IQ   IPLAL GRDI G A TGSGKT AFALP L  LL  P+R+
Sbjct:   27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 95          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  328 PEDEDDFSNAGDTKSFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            PE     S  G      +PA        + H  +F +L +S  L RAC ++G+ KP+ IQA  IP AL G+DI G A TGSGKTAAF+LP L+ L   P+
Sbjct:    6 PEASSSMSQPGPPSRSPSPASSNPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQ 105          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 47/112 (41.96%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  280 DNDHSDSE-LDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            DND    E LD  +    E+E   S+   T       D +     +F +L +   +   CE L ++KPTPIQA  IP AL GRDI G A TGSGKTAAFA+P L+ L   P+
Sbjct:   23 DNDAIAQEILDTTKSDNEEEEPKKSSKNYTS---VEVDESEEQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQ 131          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  238 KITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            K+ + ++Q+++          E +     + E     S++  + S       A     +F ELNL   LL + E++ ++KPTPIQ+  IP AL G+DI G A TGSGKTAAFA+P L+ L
Sbjct:   66 KLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            SF +L +   L  AC  +GY  PTPIQA  IPLAL  RD+ G A TGSGKTAAFALP L+ L+ +P+
Sbjct:   54 SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQ 120          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
DEAD_ECO576.557e-1459.68Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
RH36_ORYSJ8.564e-1438.97DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
DDX47_MOUSE8.564e-1456.52Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_HUMAN8.564e-1456.52Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_CAEEL8.564e-1437.27Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DDX47_BOVIN8.564e-1456.52Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
RRP3_CRYNE1.118e-1343.00ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
RRP3_YARLI1.461e-1341.96ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
RRP3_CANAL1.461e-1335.83ATP-dependent rRNA helicase RRP3 OS=Candida albica... [more]
RRP3_ASPCL1.461e-1356.72ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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