DN618439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +F +L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF+LP L+ L Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 53/136 (38.97%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 247 KSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA----------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624 K +Q + P V H+ E + P E D ++ + APA + HA ++F EL LS+ L+ C++LG PT +Q CIP AL GRD+ G A TGSGKTAAFALP L RL P + A Sbjct: 21 KKPKQEAEPQV---HTQPEEPPNPSPSPAIEPDLRDSDE-----APAAAVTEHAGDDAAAAAVPSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAA 148
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618 +F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+ Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 93
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618 +F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+ Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 93
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1 Query: 283 NDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 +D S S+ + ++ + + + + D SF EL +S+PL AC+ LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL P+ Sbjct: 2 SDSSSSDGEDNQKFLGNRKKNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ 111
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618 +F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L LL P+R+ Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 95
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13 Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 328 PEDEDDFSNAGDTKSFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 PE S G +PA + H +F +L +S L RAC ++G+ KP+ IQA IP AL G+DI G A TGSGKTAAF+LP L+ L P+ Sbjct: 6 PEASSSMSQPGPPSRSPSPASSNPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQ 105
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 47/112 (41.96%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 280 DNDHSDSE-LDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 DND E LD + E+E S+ T D + +F +L + + CE L ++KPTPIQA IP AL GRDI G A TGSGKTAAFA+P L+ L P+ Sbjct: 23 DNDAIAQEILDTTKSDNEEEEPKKSSKNYTS---VEVDESEEQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQ 131
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1 Query: 238 KITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 K+ + ++Q+++ E + + E S++ + S A +F ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+ L Sbjct: 66 KLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 SF +L + L AC +GY PTPIQA IPLAL RD+ G A TGSGKTAAFALP L+ L+ +P+ Sbjct: 54 SFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQ 120 The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bpback to top |