CX046789

Overview
NameCX046789
Unique NameCX046789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.011e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.011e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.627e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.627e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.431e-36
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.983e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.983e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CX046789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ASEAQ2.011e-3697.44Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS2.011e-3697.44Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL2.627e-3696.15Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO2.627e-3696.15Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE3.431e-3698.72Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL4.481e-3696.15Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA4.481e-3697.44Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI4.481e-3696.15Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU9.983e-3696.15Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE9.983e-3696.15Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B11-D21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046789 ID=CX046789; Name=CX046789; organism=Citrus sinensis; type=EST; length=541bp
AAAGAAAACAGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTG
ATAGAATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCT
ACCAGATCAAGATCTAGAGTCAAGATCTATTAACATTTAATTCCAGAACC
CTAAGACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGA
GAGCGTAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCA
GTGTAGGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGAC
GCCACGTGTCTCCTCGTAGATCAAGCCGCTGATACGCTTGACTCCACCTC
TACGAGCCAAACGCCGGATTGCCGGCTTTGTGATACCCTGAATGTTATCG
CGAAGCACCTTACGGTGACGCTTGGCGCCTCCCTTTCCCAATCCCTTGCC
TCCCTTACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGC
TGTTCCTCGAAAGAGAATTTGGATAGAGAAATTTGAATGTG
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