CX046789

Overview
NameCX046789
Unique NameCX046789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_LITVA (Histone H4 OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKR   TLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRXXXTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRTLY
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 4.194e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            VLRDNIQGITKPAIRRLARRGGVKRIS LIYEETRGVLK+FLENVIRDAVTYTEHA+  TVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYTEHAKIPTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CX046789 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -2 
Query:  175 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 408
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CX046789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_LITVA3.211e-3493.59Histone H4 OS=Litopenaeus vannamei PE=1 SV=2[more]
H4_APIME3.211e-3493.59Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_TRICD4.194e-3493.59Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3[more]
H4_NEUCR1.594e-3389.74Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2[more]
H4_ASPOR1.594e-3389.74Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3[more]
H4_ASPFU1.594e-3389.74Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S... [more]
H42_PENFN1.594e-3389.74Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE... [more]
H42_EMENI1.594e-3389.74Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S... [more]
H41_PENFN1.594e-3389.74Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE... [more]
H41_EMENI1.594e-3389.74Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B11-D21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046789 ID=CX046789; Name=CX046789; organism=Citrus sinensis; type=EST; length=541bp
AAAGAAAACAGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTG
ATAGAATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCT
ACCAGATCAAGATCTAGAGTCAAGATCTATTAACATTTAATTCCAGAACC
CTAAGACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGA
GAGCGTAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCA
GTGTAGGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGAC
GCCACGTGTCTCCTCGTAGATCAAGCCGCTGATACGCTTGACTCCACCTC
TACGAGCCAAACGCCGGATTGCCGGCTTTGTGATACCCTGAATGTTATCG
CGAAGCACCTTACGGTGACGCTTGGCGCCTCCCTTTCCCAATCCCTTGCC
TCCCTTACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGC
TGTTCCTCGAAAGAGAATTTGGATAGAGAAATTTGAATGTG
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