CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046770_ssr116 microsatellite CX046770_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:152..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLDIWDPF+ +    ++  SS   +ET+A ANT IDWKETP+AHVFKADLPGL         E+G+VLQISGER++E+EEKN+KWHRVE SSGKF+RRF LPENA +D+++A MENGVL
Sbjct:   19 FSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVL 138          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 80/135 (59.26%), Postives = 97/135 (71.85%), Query Frame = -2
Query:  308 DIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 712
            D WDPF+G   S+    S  R+T+A AN R+DWKETPE+HVFKADLPG+         E+G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++ASMENGVL              KAI+IS
Sbjct:   15 DFWDPFDGVFRSLVPATSD-RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEIS 148          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = -2
Query:  368 FSLDIWDPFE--GFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FS+D++DPF   GF S+      ++ E+SA ANTRIDWKETPE HVFK DLPGL         E+ RVLQISGER+ E+E+KNDKWHR+ERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:   20 FSIDVFDPFRELGFPST------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F    +++ +   E SA  +TR+DWKETPEAHVFKAD+PGL         ED RVLQISGER+ E+E+KND WHRVERSSGKF RRF LPENAK+++++ASMENGVL              KAI+IS
Sbjct:   19 FSLDMWDPFKDFHVPTSSVSA---ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEIS 153          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.175e-37
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  308 DIW-DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 712
            D+W DPF+ F S V  I   + ET+A AN R+DWKETPEAHVFK DLPG+         EDG VL +SGERSRE+E+KNDKWHRVERSSGKF+RRF LPE+AK+++++A +ENGVL              KAI+IS
Sbjct:   15 DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEIS 150          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+  +SS     S +RE SA+ N R+DW+ETPEAHVFKADLPGL         E+  VL+ISGER  E+E+KND WHRVERSSG+F RRF LPEN KMDQ++A+MENGVL
Sbjct:   20 FSLDVWDPFKELTSS-----SLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVL 132          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+ F    +++ +   E SA  NTR+DWKET EAHV KAD+PGL         ED RVLQISGER+ E+E+KND WHRV+RSSGKFMRRF LPENAK++Q++A MENGVL
Sbjct:   19 FSLDMWDPFKDFHVPTSSVSA---ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVL 133          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 76/136 (55.88%), Postives = 94/136 (69.12%), Query Frame = -2
Query:  308 DIW-DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 712
            D+W DPF+ F S V  I     ET+A AN R+DWKETPEAHVFKADLPG+         EDG VL +SGER++E+E+KNDKWHRVERSSGKF+RRF L E+AK+++++A +ENGVL              KAI IS
Sbjct:   15 DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 75/119 (63.03%), Postives = 87/119 (73.11%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+         PSS + ETSA+ N R+DWKET EAHVFKADLPG+         ED  VL+ISGER  E+EEK D WHRVERSSG+F R+F LPEN KMDQ++ASMENGVL
Sbjct:   21 FSLDVWDPFKELQ-----FPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 74/118 (62.71%), Postives = 86/118 (72.88%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+         PSS+  +SA+AN R+DWKET EAHVFKADLPG+         ED  VL+ISGER  E+EEK D WHRVERSSG F R+F LPEN KMDQ++ASMENGVL
Sbjct:   22 FSLDVWDPFKELQ-----FPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP12_DAUCA4.969e-3864.1718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16C_ORYSJ6.489e-3859.2616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_SOLLC1.888e-3766.6717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP14_SOYBN2.466e-3757.9717.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16A_WHEAT7.175e-3757.3516.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS17B_ARATH2.087e-3663.5617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP15_SOYBN3.561e-3662.7117.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_WHEAT6.715e-3555.8816.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH1.496e-3463.0317.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH9.697e-3462.7117.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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