CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046770_ssr116 microsatellite CX046770_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:152..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  368 SLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQE---EKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 718
            S+D W   + F +    + S A     L N R+DWKETP AHVF ADLPG+         EDG VL ISGER+RE++   + +++WH VERSSGKF RRF LP  A++DQ+ ASM+NGVL
Sbjct:   14 SVDFWADADPFGA----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  368 DIW-DPFEGFSSSVANIPSSARE---TSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 712
            D+W D F      +  IP    +   +  L++ R+DWKETPE HV   D+PGL         E+ RVL++SGER +E+++K D WHRVERS GKF R+F LP+N  +D ++A MENGVL
Sbjct:   43 DLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = -2
Query:  368 DIW-----DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 712
            D+W     DPF         +      + A++  R+DWKETPE HV   D+PGL         E+ RVL++SGER +E+E+K D WHRVERS GKF R+F LP+N  +D ++A +ENGVL
Sbjct:   35 DLWSDRFPDPFRVLEHIPFGVDKD-EASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  368 DIW-DPFEGFSSSVANIPSSA-RETS-ALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 712
            D+W D F      +  IP    R+TS AL+  R+DWKET E H    D+PGL         E+  VL++SGER RE+E+K D+WHRVERS GKF R+F LP+N  M+ ++A +ENGVL
Sbjct:   40 DLWLDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  368 SLDIWDPFEGFSS--SVANIPSSARETSALANTR-IDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 718
            S+DI +PF    S  + A  PS+A   + + +T  +DWKET  AHVF AD+PG+         E+ +VL+ISG+R+R  EEK ++WHRVERSS +F+R   LP NA  D + A+++NGVL
Sbjct:   37 SVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = -2
Query:  368 SLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLP-GLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 718
            + D W+PF  F ++VA     A +TSA ANT I+ +ET EA+VF+ADLP G+         ++G VL I+GERS  +EEK  + H +ERS   F  RF LP++A +D +RASM+ G+L
Sbjct:   11 AFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = -2
Query:  308 VLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 526
            +LQISGER+ E+E+KND WHRVERSSGKFMR F LP+NAK+DQ++ASMENGVL              KAI+IS
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEIS 73          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = -2
Query:  368 ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQ--EEKN--DKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 649
            + + L+  R+DW+ET +AH    D+PG+         ED RVL+ISGER RE+  E+K   D WHR ERS G+F R+  LP+NA +D I AS++NGVL
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  368 EGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 694
            E       N PS    R+  A+A T  D KE P ++VF  D+PGL         E+  VL ISGER RE+E++  K+ R+ER  GKFMR+F LPENA  D I A  ++GVL
Sbjct:   22 EAAGEDSVNAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVL 132          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  368 RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 652
            R+  A+A T  D KE P A+ F  D+PGL         ED RVL +SGER RE+ E + K+ R+ER  GKFMR+F LP+NA +D++ A   +GVL
Sbjct:   47 RDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 141          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS166_ORYSJ5.698e-2650.8316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA6.965e-2446.2222.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN1.188e-2345.0022.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH1.006e-2248.3122.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ2.477e-2145.8318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ1.229e-2045.7617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN5.711e-1863.01Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ9.742e-1847.9623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE8.247e-1745.0517.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP22_MAIZE5.346e-1647.3717.8 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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