CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = -2
Query:  368 WDPFEGFSSSVANIPSSARETSALANT-RIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 706
            WDPFE     +AN P  A      A     + +ET EA++FKADLPG+            RV  +SG+R RE+ E++++++  ER+ G F R F LPE    D +RA ++NGVL
Sbjct:   32 WDPFE-----LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVL 139          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  368 PFEGFSSSVANIPSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 700
            P +  +    N PS    R+  A+A T  D  E P A+ F  D+PG+         E+  VL +SGER RE +E    K+ R+ER  GKFMR+F LPENA +D+I A   +GVL
Sbjct:   19 PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  368 DIWDPFEGFSSSVANIPSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 712
            D+ +  E  +    N PS A  R+  A+A T  D  E P+A+VF  D+PG+         E+  VL +SG+R R+ +E    K+ R+ER  GKFMR+F LP+NA +++I A+  +GVL
Sbjct:   16 DMLEAPEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVL 133          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  368 NIPSSA--RETSALANTRIDWKE--TPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKND-----KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 670
            N P+ A  R+  A+ANT +D KE     A V   D+PG+         EDG VL ISGER R   + +D     K+ R+ER  GKFMRRF LPE+A +D +RA  ++GVL
Sbjct:   33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVL 142          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  368 SALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISG-------ERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 643
            SA A   +DW ETP +HV + ++PGL         EDG VL + G       E+ RE+E K+  WH  ER   +F R   LP   +++QIRAS++NGVL
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVL 122          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  368 PSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQI--------------SGERSREQEEKND--KWHRVERSSGK---FMRRFGLPENAKMDQIRASMENGVL 664
            P +    +  A   +DW+ETP AHVF+ DLPGL          DG +L++              +G+ S E+EE+ND  +WH  ER++G+    + +F LPE+A  D+  A M +GVL
Sbjct:   15 PGAGGVVAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SP21_STIAU1.456e-1339.47Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS176_ARATH1.456e-1341.2317.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH1.901e-1338.9817.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ9.436e-1344.5519.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_ORYSJ1.609e-1241.4116.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ7.988e-1235.5917.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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