CX046769

Overview
NameCX046769
Unique NameCX046769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.773e-29
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQE---EKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            R  NV DP S+D W   + F +    + S A     L N R+DWKETP AHVF ADLPG+          DG VL ISGER+RE++   + +++WH VERSSGKF RRF LP  A++DQ+ ASM+NGVL
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.538e-24
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  162 DIW-DPFEGFSSSVANIPSSARE---TSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            D+W D F      +  IP    +   +  L++ R+DWKETPE HV   D+PGL          + RVL++SGER +E+++K D WHRVERS GKF R+F LP+N  +D ++A MENGVL
Sbjct:   43 DLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.627e-23
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  162 DIW-----DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            D+W     DPF         +      + A++  R+DWKETPE HV   D+PGL          + RVL++SGER +E+E+K D WHRVERS GKF R+F LP+N  +D ++A +ENGVL
Sbjct:   35 DLWSDRFPDPFRVLEHIPFGVDKD-EASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  162 DIW-DPFEGFSSSVANIPSSA-RETS-ALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            D+W D F      +  IP    R+TS AL+  R+DWKET E H    D+PGL          +  VL++SGER RE+E+K D+WHRVERS GKF R+F LP+N  M+ ++A +ENGVL
Sbjct:   40 DLWLDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 55/123 (44.72%), Postives = 79/123 (64.23%), Query Frame = 3
Query:  147 DPFSLDIWDPFEGFSS--SVANIPSSARETSALANTR-IDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            +P S+DI +PF    S  + A  PS+A   + + +T  +DWKET  AHVF AD+PG+          + +VL+ISG+R+R  EEK ++WHRVERSS +F+R   LP NA  D + A+++NGVL
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 3
Query:  141 VFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            +FD  + D W+PF  F ++VA     A +TSA ANT I+ +ET EA+VF+ADLP G+          +G VL I+GERS  +EEK  + H +ERS   F  RF LP++A +D +RASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  348 VLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            +LQISGER+ E+E+KND WHRVERSSGKFMR F LP+NAK+DQ++ASMENGVL               AI+IS
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEIS 73          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.334e-17
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  225 ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQ--EEKN--DKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            + + L+  R+DW+ET +AH    D+PG+          D RVL+ISGER RE+  E+K   D WHR ERS G+F R+  LP+NA +D I AS++NGVL
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-16
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  180 EGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            E       N PS    R+  A+A T  D KE P ++VF  D+PGL          +  VL ISGER RE+E++  K+ R+ER  GKFMR+F LPENA  D I A  ++GVL
Sbjct:   22 EAAGEDSVNAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVL 132          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.605e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  147 DPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDG-RVLQISGERSR-----EQEEKND--KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            DPF +    P        A   ++A E +A+A  R DWKETPEAHV   D+PG+          +  RVL++SGER R     E+E + D  +WHR ER++G+F RRF +P  A + ++ A +++GVL
Sbjct:   41 DPFRVLEQSPLRPAGGVAA--AAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
The following BLAST results are available for this feature:
BLAST of CX046769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS166_ORYSJ5.773e-2950.3916.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA9.538e-2445.3822.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN1.627e-2344.1722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH1.377e-2247.4622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ4.007e-2244.7218.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ6.835e-2245.5317.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN7.821e-1861.64Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ1.334e-1746.9423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.129e-1644.1417.3 kDa class II heat shock protein OS=Solanum pe... [more]
HS219_ORYSJ5.605e-1639.0621.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046769 ID=CX046769; Name=CX046769; organism=Citrus sinensis; type=EST; length=872bp
AAAATTTATTATACATTAGTACACACACACACAGAAACAGAAGCAAACGC
AGCAAATTAAGCTACGTACATAGTGAAACACACACACGTACACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTAGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGTGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGAAAGTTCATGAGGAGGTTCGGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGCCTGAGGTTGAGCCCGAGGCCGAGAAACAAGTT
GTCATACAAAATGATATGTCATCTACATATACATCCATGCACATGGCTTT
AACTAAATCAAGTAGGGTTTTTTGGCCTTTTGATCAGTTTTCTCTTCTGT
CTGAATAATAATAGTAAATAATATTGTAGTGTAGTGTTGTCTACTTGTCT
TGTCTTGTTTTTGTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTG
TATTATACATGAAGTTATAAAATGTTTGTTGTAAATTAAGCTTATAGAAA
TAATGTAAAAAAAAAAAAAAAA
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