CX046769

Overview
NameCX046769
Unique NameCX046769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.526e-13
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  252 IDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSS-----GKFMRRFGLPENAKMDQIRASMENGVL 506
            IDW E+  +H+FK ++PG           +G VL I GE  +E++++N  WH  ER +      +F+RR  LPEN K+DQ++A +ENGVL
Sbjct:   24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  144 FDPFSL--DIWDPFEGFSSSVANIPSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            F  FS+  D+ +  E  +    N PS A  R+  A+A T  D  E P+A+VF  D+PG+          +  VL +SG+R R+ +E    K+ R+ER  GKFMR+F LP+NA +++I A+  +GVL
Sbjct:    8 FPIFSILEDMLEAPEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  174 PFEGFSSSVANIPSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            P +  +    N PS    R+  A+A T  D  E P A+ F  D+PG+          +  VL +SGER RE +E    K+ R+ER  GKFMR+F LPENA +D+I A   +GVL
Sbjct:   19 PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  204 NIPSSA--RETSALANTRIDWKE--TPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKND-----KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            N P+ A  R+  A+ANT +D KE     A V   D+PG+          DG VL ISGER R   + +D     K+ R+ER  GKFMRRF LPE+A +D +RA  ++GVL
Sbjct:   33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVL 142          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  231 SALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISG-------ERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            SA A   +DW ETP +HV + ++PGL          DG VL + G       E+ RE+E K+  WH  ER   +F R   LP   +++QIRAS++NGVL
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVL 122          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  210 PSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQI--------------SGERSREQEEKND--KWHRVERSSGK---FMRRFGLPENAKMDQIRASMENGVL 506
            P +    +  A   +DW+ETP AHVF+ DLPGL          DG +L++              +G+ S E+EE+ND  +WH  ER++G+    + +F LPE+A  D+  A M +GVL
Sbjct:   15 PGAGGVVAGEARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS157_ARATH1.526e-1341.1115.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS177_ARATH1.993e-1338.1017.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS176_ARATH1.993e-1340.3517.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ1.292e-1243.6419.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_ORYSJ2.204e-1240.4016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ1.094e-1135.5917.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046769 ID=CX046769; Name=CX046769; organism=Citrus sinensis; type=EST; length=872bp
AAAATTTATTATACATTAGTACACACACACACAGAAACAGAAGCAAACGC
AGCAAATTAAGCTACGTACATAGTGAAACACACACACGTACACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTAGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGTGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGAAAGTTCATGAGGAGGTTCGGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGCCTGAGGTTGAGCCCGAGGCCGAGAAACAAGTT
GTCATACAAAATGATATGTCATCTACATATACATCCATGCACATGGCTTT
AACTAAATCAAGTAGGGTTTTTTGGCCTTTTGATCAGTTTTCTCTTCTGT
CTGAATAATAATAGTAAATAATATTGTAGTGTAGTGTTGTCTACTTGTCT
TGTCTTGTTTTTGTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTG
TATTATACATGAAGTTATAAAATGTTTGTTGTAAATTAAGCTTATAGAAA
TAATGTAAAAAAAAAAAAAAAA
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