CX046751

Overview
NameCX046751
Unique NameCX046751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:670..1489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.273e-48
Identity = 84/166 (50.60%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  119 RAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            R KIPDP+AVKPDDWDEDAP +I DE+A KPEGWL           A KP            AP+I NP+CE+APGCG W+RP+  NP YKGKW  P+IDNP+Y+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FDN +I  D ++ + +    W
Sbjct:  290 RPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGW 455          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.601e-44
Identity = 87/198 (43.94%), Postives = 111/198 (56.06%), Query Frame = 2
Query:   41 DDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDV 631
            DD  PP+                   RAKIPDP AVKP+DWDE+ P +IED  AVKP+GWL           A KP            AP I NP C+   GCGEWK PM  NP YKG W  P+I+NPNY+G+W PQ+IPNP+YFE D P      +A+G+E+W+M   I FDN +I  +++VA+ +    W+ K  V
Sbjct:  255 DDVVPPINPPREIDDPSDKKPEEWDDRAKIPDPTAVKPEDWDENEPAQIEDSSAVKPDGWLDDEPKFIPNPKAEKPEDWSDDMDGEWEAPHIPNPACQI--GCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFEDDHPFLLTSFSALGLELWSMTPDIYFDNFIICSEKEVADQWATDGWELKIMV 450          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.291e-43
Identity = 83/169 (49.11%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  119 RAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 622
            RAKIPDP AVKP+DWDE  P +IED   VKP GWL           A KP            AP+I NP C    GCGEWK PM  NP YKG W  PL+DNPNY+GIW P++IPNP+YFE D P      +A+G+E+W+M   I FDN +I  +++VA+ + A  W+ K
Sbjct:  281 RAKIPDPSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQILNPACRI--GCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLTSFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGWRWK 447          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.995e-41
Identity = 80/169 (47.34%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  119 RAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 622
            RAKIPD  AVKP+DWDE  P +I D  AVKP+GWL           A KP            AP I NP C    GCGEW  PM  NP YKG W  P+IDNPNY+GIW P++IPNP+YFE + P       A+G+E+W+M   I FDN +I  +++VA+ + A  W  K
Sbjct:  277 RAKIPDASAVKPEDWDESEPPQIVDSSAVKPDGWLDNEPEFIPDPNAEKPFDWNEDMDGEWEAPHISNPACRI--GCGEWSPPMIDNPKYKGIWRPPMIDNPNYQGIWSPRKIPNPDYFEDNHPFLLTSFRALGLELWSMTSDIYFDNFIICSEKEVADRWAADGWGMK 443          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.278e-40
Identity = 84/194 (43.30%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   44 DFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPK 622
            DF PP++                    +IPDP+AVKPDDWDEDAP  I D DAVKPE WL           A KP              +I NPKC    GCGEWK PM RNP Y+G W  P+I NP + G W P++IPNP+YF+ D P  F P+  VG E+WTMQ  I F NI +    + AE      + PK
Sbjct:  231 DFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHSIEDAERLGNETFLPK 424          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.404e-36
Identity = 77/157 (49.04%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  119 RAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGILFDNILISKDEK 583
            R  I D  AVKPDDWDE+ P  + DE A KP  W            A KP            AP IDNP C+   GCG WK P  +NP YKGKW  P I NP +KG W  + I NPNYFE  KP     PI AVGIE+WTM + ILFDNILI+  E+
Sbjct:  282 RENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAPLIDNPACKGLSGCGTWKAPTIKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFE-PKPFAGLAPITAVGIEMWTMSENILFDNILITSSEE 437          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  207 KIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  207 KIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  207 KIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 60/163 (36.81%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  128 IPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            I DP A KP+DWDE    EI D +  KPEGW            A KP                           G W+ PM  NP YKG+W A +I NP YKGIW    I NP+Y   DK  +F+ +  VG E+W ++ G +FDNIL++ D + A+ +    W
Sbjct:  211 IKDPKASKPEDWDERE--EIADPEDKKPEGW-DDIPATIADKDAKKPEDWDDEED-------------------GTWEPPMIPNPEYKGEWKAKMIKNPAYKGIWVAPDIDNPDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTW 351          
The following BLAST results are available for this feature:
BLAST of CX046751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALX_HUMAN2.273e-4850.60Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CLGN_MOUSE2.601e-4443.94Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_HUMAN1.291e-4349.11Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CLGN_BOVIN5.995e-4147.34Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_SCHPO2.278e-4043.30Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_CAEEL3.404e-3649.04Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_MACFU8.141e-2235.71Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA8.141e-2235.71Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN8.141e-2235.71Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CHLRE8.141e-2236.81Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A03-B5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046751 ID=CX046751; Name=CX046751; organism=Citrus sinensis; type=EST; length=820bp
TGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGATGATTTTC
AGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGACAAGAAG
CCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATGCAGTAAA
ACCTGACGACTGGGATGAGGATGCTCCGATGGAAATTGAAGATGAGGATG
CTGTGAAACCTGAAGGATGGCTGGATGATGAGCCTGAGGAGATAGATGAC
CCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATGGTGAATG
GGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGATGCG
GCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGGCAAATGG
CATGCTCCACTTATTGACAACCCTAATTACAAGGGTATTTGGAAGCCTCA
GCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGACTTTGAGC
CTATTGCTGCTGTCGGCATTGAGATCTGGACAATGCAGGATGGTATTTTG
TTTGACAACATTTTGATATCAAAGGATGAGAAAGTTGCAGAGTCCTATCG
GGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAAAGAGAAACTGAAGG
CTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAGGCTTCCAGAAGACG
GTATTTGATCTCTTGTACAAGGTTGCAGACATTCCTTTCTTGGATGCATA
CAAACTTAAGATCATTGATGTGATTGAGAAGGGAGAGAAACAACCAAACC
TTACAATTGGTATCCTTGTC
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