CX046751

Overview
NameCX046751
Unique NameCX046751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:670..1489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE A  +I+D    KPE W              KP             P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++    +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  207 KIKDPDASKPEDWDERA--KIDDPTDSKPEDW-------------DKPEHIPD--------PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.814e-21
Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  134 DPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 598
            DP+  KP+DWD++ P +I D DA +P+ W                                           G+W+ PM  NP YKG+W A  I NP YKG+WKP+ IPNP Y   DK   F+ IAAVG ++W ++ G +FDNI+++     A+++
Sbjct:  223 DPEDKKPEDWDKE-PAQIPDPDATQPDDWDEEED--------------------------------------GKWEAPMISNPKYKGEWKAKKIPNPAYKGVWKPRDIPNPEYEADDKVHIFDEIAAVGFDLWQVKSGTIFDNIIVTDSLAEAKAF 339          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.093e-21
Identity = 57/158 (36.08%), Postives = 78/158 (49.37%), Query Frame = 2
Query:  119 RAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPDF-EPIAAVGIEIWTMQDGILFDNILISKDEKVA 589
            RA IPDPD  KP+DWD+  P  I D DA KPE W                              ++D          GEW+ PM  NP +KG+W    +DNPNYKG W+  +I NP Y   DK    + I  +G ++W ++ G +FDN+LI+ D ++A
Sbjct:  222 RATIPDPDDKKPEDWDK--PEHIPDPDATKPEDW----------------------------DDEMD----------GEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYVPDDKLYLRKEICTLGFDLWQVKSGTIFDNVLITDDVELA 339          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.040e-21
Identity = 56/158 (35.44%), Postives = 74/158 (46.84%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            DDWD   P +I+D DA KPE W             T               P    P+       GEW+ P+ +NP YKG+W    IDNP YKGIW   +I NP Y     PD     +E  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  198 DDWDFLPPKKIKDPDAAKPEDW----DDRAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPEYKGIWIHPEIDNPEY----SPDSNIYAYENFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            DDWD   P +I+D DA KPE W             T               P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  198 DDWDFLPPKKIKDPDAAKPEDW----DERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            DDWD   P +I+D DA KPE W             T               P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  198 DDWDFLPPKKIKDPDAAKPEDW----DERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            DDWD   P +I+D DA KPE W             T               P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  198 DDWDFLPPKKIKDPDAAKPEDW----DERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-----FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            DDWD   P +I+D DA KPE W             T               P    P+       GEW+ P+ +NP YKG+W    IDNP+YKG W   +I NP Y     PD     ++  A +G+++W ++ G +FDN LI+ DE  AE +    W
Sbjct:  198 DDWDFLPPKKIKDPDASKPEDW----DERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY----SPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 347          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 62/182 (34.07%), Postives = 78/182 (42.86%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DP A KP+DWD+                D P EI D DA KPE W                            AP I NP+       GEWK    +NPAYKGKW AP+IDNP +K                D P+   F  +  VG+E+W ++ G LFDN+L+S D + A+      W
Sbjct:  210 KIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIPDTDAKKPEDW-------------------DDEEDGEWTAPTIPNPEYN-----GEWKPKKIKNPAYKGKWKAPMIDNPEFK----------------DDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETW 351          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.834e-20
Identity = 62/182 (34.07%), Postives = 77/182 (42.31%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DP+A KP+DWDE                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNYKG WK   I NP++   D P+   +  +  VGIE+W ++ G LFDN+LI  D + A+      W
Sbjct:  208 KIKDPEAKKPEDWDEKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEED------GEWTAPTIANPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDF--KDDPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETW 349          
The following BLAST results are available for this feature:
BLAST of CX046751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_CERAE8.141e-2235.71Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_EUGGR1.814e-2134.62Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_DROME3.093e-2136.08Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_BOVIN4.040e-2135.44Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_RAT2.005e-2034.18Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_MOUSE2.005e-2034.18Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_CRIGR2.005e-2034.18Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RABIT3.420e-2034.18Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR1_ARATH3.420e-2034.07Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_RICCO5.834e-2034.07Calreticulin OS=Ricinus communis PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A03-B5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046751 ID=CX046751; Name=CX046751; organism=Citrus sinensis; type=EST; length=820bp
TGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGATGATTTTC
AGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGACAAGAAG
CCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATGCAGTAAA
ACCTGACGACTGGGATGAGGATGCTCCGATGGAAATTGAAGATGAGGATG
CTGTGAAACCTGAAGGATGGCTGGATGATGAGCCTGAGGAGATAGATGAC
CCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATGGTGAATG
GGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGATGCG
GCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGGCAAATGG
CATGCTCCACTTATTGACAACCCTAATTACAAGGGTATTTGGAAGCCTCA
GCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGACTTTGAGC
CTATTGCTGCTGTCGGCATTGAGATCTGGACAATGCAGGATGGTATTTTG
TTTGACAACATTTTGATATCAAAGGATGAGAAAGTTGCAGAGTCCTATCG
GGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAAAGAGAAACTGAAGG
CTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAGGCTTCCAGAAGACG
GTATTTGATCTCTTGTACAAGGTTGCAGACATTCCTTTCTTGGATGCATA
CAAACTTAAGATCATTGATGTGATTGAGAAGGGAGAGAAACAACCAAACC
TTACAATTGGTATCCTTGTC
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