CX046751

Overview
NameCX046751
Unique NameCX046751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:670..1489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 57/166 (34.34%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            +I DP+A KP+DW++     I D +  KPEG+            A KP            AP I NP  +     GEWK    +NP +KGKW AP+IDNP++K                D PD   F  +  VGIE+W ++ G +FDN+LI  D   A+      W
Sbjct:  210 QIKDPEAKKPEDWEDKE--YIPDPEDKKPEGY-DDIPKEITDPEAKKPEDWDDEEDGEWTAPTIPNPDYK-----GEWKPKKIKNPNFKGKWKAPMIDNPDFK----------------DDPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETW 351          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 59/182 (32.42%), Postives = 75/182 (41.21%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DP A KP+DWDE                D P EI D D+ KPE W                                D+ +       GEW  P   NP Y G+W    I NPNYKG W+   I NP++   D P+   F  +  VG+E+W ++ G LFDN+LI  D   A+      W
Sbjct:  210 KIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDW--------------------------------DDEED------GEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDF--KDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETW 351          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 59/161 (36.65%), Postives = 74/161 (45.96%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPDF-----EPIAAVGIEIWTMQDGILFDNILISKDEKVAE 592
            KI DP+A KP+DWD D P  I D +  KPE W            ATKP                           GEW+ PM  NP YKG W    IDNP YKG W   +I NP Y     PD      + I AVG+++W ++ G +FD+ LI+ D   A+
Sbjct:  207 KIKDPEAKKPEDWD-DKP-TIPDPEDKKPEDW--DKPEHIPDPDATKPEDWDDEMD-------------------GEWEPPMIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY----TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK 340          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 9.639e-15
Identity = 50/159 (31.45%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 598
            +I DP+ VKP   D D P  I D +AVKPE W                                 N + +     GEW+ P   NP YKG+W A  I NP YKG W    I NP Y E ++   F  + A+G E+W ++ G +F+N++++   + A+ +
Sbjct:  224 EIDDPEDVKPAGHD-DIPASIVDPEAVKPEDW---------------------------------NEEDD-----GEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDF 343          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 54/160 (33.75%), Postives = 70/160 (43.75%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAES 595
            KI   +A KP+DWD+     I+D + VKPEG+            A +P             PKI N   +     G WK    +NP YKGKW  P IDNP ++                D PD    + I   GIE+W ++ G +FDNILI  D   A S
Sbjct:  216 KIKVKNAKKPEDWDDRE--YIDDPNDVKPEGF-DSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYK-----GPWKAKRIKNPNYKGKWKNPWIDNPEFE----------------DDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARS 351          
The following BLAST results are available for this feature:
BLAST of CX046751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALR_BERST3.201e-1834.34Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR2_ARATH9.314e-1832.42Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_BOMMO1.589e-1736.65Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_DICDI9.639e-1531.45Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR3_ARATH3.101e-1333.75Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A03-B5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046751 ID=CX046751; Name=CX046751; organism=Citrus sinensis; type=EST; length=820bp
TGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGATGATTTTC
AGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGACAAGAAG
CCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATGCAGTAAA
ACCTGACGACTGGGATGAGGATGCTCCGATGGAAATTGAAGATGAGGATG
CTGTGAAACCTGAAGGATGGCTGGATGATGAGCCTGAGGAGATAGATGAC
CCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATGGTGAATG
GGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGATGCG
GCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGGCAAATGG
CATGCTCCACTTATTGACAACCCTAATTACAAGGGTATTTGGAAGCCTCA
GCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGACTTTGAGC
CTATTGCTGCTGTCGGCATTGAGATCTGGACAATGCAGGATGGTATTTTG
TTTGACAACATTTTGATATCAAAGGATGAGAAAGTTGCAGAGTCCTATCG
GGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAAAGAGAAACTGAAGG
CTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAGGCTTCCAGAAGACG
GTATTTGATCTCTTGTACAAGGTTGCAGACATTCCTTTCTTGGATGCATA
CAAACTTAAGATCATTGATGTGATTGAGAAGGGAGAGAAACAACCAAACC
TTACAATTGGTATCCTTGTC
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