DN618403

Overview
NameDN618403
Unique NameDN618403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618403 vs. ExPASy Swiss-Prot
Match: WRK30_ARATH (Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = -2
Query:  255 VPAISSKIADIP--------PDEYSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA 476
            +P  SSK+   P         D +SWRKYGQK I G+ +PRGYY+C+    +GC A K V+R+ ++  +L ++Y G H  SQAA
Sbjct:   93 MPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSCSQAA 176          
BLAST of DN618403 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  258 SKRRKNRVKKTIRVPAISSKIADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQA 515
            SK+RK   K + +V     +  + P D+ +SWRKYGQK I G+ +PR YY+C+  + + C A K V+R+  D T+  VTY G H  SQA
Sbjct:  132 SKKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQA 220          
BLAST of DN618403 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = -2
Query:  267 SDDLSGKFSGSTSGNN-----KCHCSKRRKNRVKKT-IRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 575
            S+  +G+  GS S          +   +  ++ K+T  RV   +    D+  D + WRKYG+K +K +   R YYKCS+  GC  +K VER  DD   +I TYEG H H
Sbjct:   59 SETFTGESGGSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSS-EGCSVKKRVERDGDDAAYVITTYEGVHNH 166          
The following BLAST results are available for this feature:
BLAST of DN618403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK30_ARATH1.396e-1142.86Probable WRKY transcription factor 30 OS=Arabidops... [more]
WRK53_ARATH1.823e-1142.70Probable WRKY transcription factor 53 OS=Arabidops... [more]
WRK51_ARATH2.381e-1135.78Probable WRKY transcription factor 51 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618403 ID=DN618403; Name=DN618403; organism=Citrus sinensis; type=EST; length=633bp
CCCCTTTTTTTTTATTAATTAATTTTATTTTTAAATTTTACTCCAACAAA
ATTTACATTAATACCCTCCATCCGACCTTCCATCGGCCCCGCAACAACAT
CGATATTAGAAAATGCTACCGCGTCTTGTCATTATCTTCCCACCCACTTT
CCTTTATCAATTCTCTCTCTCTCTCTACTTTTTCTTTTTTGTTCATTTTC
TCACGTTGACTCGAAAACCAAACCCACTCCAGCAGGGGCCGCGTTCTCCT
GCATCGCGGCCTGCGAATGCCGGTGCTCTCCTTCGTACGTCACAATCAGC
ATCGTTGGATCGTCTGGTGCCCTCTCCACGTGTTTCCTGGCTGGGCACCC
TCTCATTGTACTGCACTTGTAATAGCCGCGTGGGTATGGTGAGCCCTTGA
TCGGCTTTTGACCATACTTCCTCCAAGAATACTCGTCCGGTGGAATATCG
GCTATTTTTGAACTAATCGCCGGCACTCTAATAGTTTTCTTTACTCGGTT
TTTCCTTCTCTTAGAGCAGTGACACTTGTTGTTGCCAGAGGTGGAGCCGG
AGAACTTGCCGGAAAGATCATCGGAATGATCTTTATGATCTTGACACCTC
TTCTTGTAAGGCTGAGCCGCGAGCGGCGGCTTT
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