CX046730

Overview
NameCX046730
Unique NameCX046730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046730_ssr262 microsatellite CX046730_ssr262:262..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3800 contig Csv1_Contig3800:707..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.218e-21
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  295 DSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 741
            D  L+ +  L+PK++ V EQD N N      R +EA   Y+A+F+ L+ ++ R S ER+ VE+     +I NI+ACEG ER ER+E   KW  R  +A F   P+S       + L++   C+ Y++ E+   +  CW ++ L   SAW
Sbjct:  444 DELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAW 592          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLK---------------VEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  L ++  + P+++ V EQ++NHN  T ++R  E+L+ Y+ +FD LE   S      +                + ++  G +I N++ACEG ER ERHE L +W  R   A F  V L      QA  LL  +   DGY++ E   C+ + WH RPL + SAW
Sbjct:  453 LEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGGSSGGGPSEVSSGAAAAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 618          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLE-----------SSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  L ++  + P+++ V EQ++NHN  T ++R  E+L+ Y+ +FD LE           +S +        + ++  G +I N++ACEG ER ERHE L +W  R   + F  V L      QA  LL  +   DGYR+ E + C+ + WH RPL + SAW
Sbjct:  461 LEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAGAGSGQSTDASPAAAGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAW 622          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSM-----------ERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  L ++  + P+++ V EQ++NHN  + ++R  E+L+ Y+ +FD LE   S  +                + ++  G +I N++ACEG ER ERHE L +W  R   A F  V L      QA  LL  +   DGYR+ E   C+ + WH RPL + SAW
Sbjct:  459 LEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAW 620          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLK--------------VEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  L ++  + P+++ V EQ++NHN  + ++R  E+L+ Y+ +FD LE   S    E                 + ++  G +I N++ACEG ER ERHE L +W  R   A F  V L      QA  LL  +   DGY++ E   C+ + WH RPL + SAW
Sbjct:  449 LEKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGGPSEVSSGGAAPAAAAGTDQVMSEVYLGRQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAW 613          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  295 NSLW---GLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 729
            N+LW    L+PKV+ V EQD +H G + + R +EA++ Y+ALFD L +     S ER  VE+ L   EI+N++A  G  R     K   W ++F  + F  V L+     QA  LL  ++ DGY +AEDN  + + W D  L + SAW
Sbjct:  631 NTLWLLQRLAPKVVTVVEQDLSHAG-SFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSRSGE-VKFNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAW 776          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.808e-18
Identity = 55/151 (36.42%), Postives = 83/151 (54.97%), Query Frame = -2
Query:  286 NSLW---GLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCR 729
            ++LW    L+PKV+ V EQD +H G + + R +EA++ Y+ALFD L +S    S ER  VE+ L  +EI+N++A  G  R     K E W ++     F  + L+     QA  LL  +  DGY + +DN  + + W D  L + SAW+ R
Sbjct:  504 HTLWLLQRLAPKVVTVVEQDLSHAG-SFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSR-SGEVKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTPR 652          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = -2
Query:  295 NSLW---GLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 729
            N+LW    L+PKV+ + EQD +H+G + + R +EA++ Y+ALFD L++S    S ER  VE+ L   EI+N++A  G   +    K   W ++   + F    L+     QA  LL  +  DGY + E+N  + + W D  L + SAW
Sbjct:  514 NTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGG-PARTGDVKFGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAW 659          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  295 NSLW---GLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 729
            N+LW    L+PKV+ + EQD +H+G + + R +EA++ Y+ALFD L++S S  S ER  VE+ L   EI+N++A  G   +    K   W ++   + F    L+     QA  LL  +  DGY + E+N  + + W D  L + SAW
Sbjct:  507 NTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGG-PARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAW 652          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  295 NSLW---GLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 729
            N+LW    L+PKV+ + EQD +H+G + + R +EA++ Y+ALFD L++S S  S ER  VE+ L   EI+N++A  G   +    K   W ++   + F    L+     QA  LL  +  DGY + E+N  + + W D  L + SAW
Sbjct:  507 NTLWLIQRLAPKVVTMVEQDLSHSG-SFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGG-PARTGDVKFGSWREKLAQSGFRVSSLAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAW 652          
The following BLAST results are available for this feature:
BLAST of CX046730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SCL1_ARATH1.218e-2135.57Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
RHT1_WHEAT2.713e-2133.13DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
DWRF8_MAIZE2.713e-2133.95DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SLR1_ORYSJ6.045e-2133.95DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
SLN1_HORVU7.894e-2133.33DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
SCR_IPONI2.540e-1938.51Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCR_ARATH2.808e-1836.42Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
SCR_MAIZE4.054e-1735.14Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
SCR2_ORYSJ4.054e-1735.81Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI4.054e-1735.81Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046730 ID=CX046730; Name=CX046730; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTAATCCACAAAGAAGCACAATACATCATTTCAGAAAC
AATGATACAAATTAATAAAATTTAGTATACAACATAATCAAAACAAAAGC
TTATAGTTATCTATACATGCCAAATTAAGATCCAATCTAATTTCATTCGA
TGTAAAATGATACGAATGAAACAAACGACTAGTAGGTAGGTTCATGACTA
GGACTTTTATATCATTACAACAGTATGCATTGCAGATAAACAGAATCATT
TCAATGTCACCATCAATCAATCACCAGTCTTACTTCCTACAGCTCCATGC
TGATACCGAAAATAGAGGTCGATCGTGCCAGCAAATTAGCACACACCTGT
TGTCTTCTGCAATCCTATACCCATCACAGTTGTAGCTCTGCAACAATCTC
CTCGCCTGCAACATACCACAGTAGCTCAAAGGCACATTTCCAAAGCAAGC
CAAATCAAAACGTTGAATCCACTTCTCGAGTTTCTCATGTCTTTCCTTCC
TTTCAAATCCTTCACAAGCTATAATGTTTTTAATTTCCTCCCCAAACAGC
ATTTTCTCCACCTTCAATCTCTCCATTGATGTTCTTGAAACACTAGATTC
TAAACAATCAAACAATGCTGCATACGAGTAAAGAGCCTCCAATAACCTCT
CCATGAGAGTCAAGCCATTGTGATTAGAATCCTGTTCTGTCACCACCATA
ACTTTTGGTGACAAGCCCCACAGAGAATTAAGAAAGCTGTCCATCTTTGC
TGAAGCA
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