CX046677

Overview
NameCX046677
Unique NameCX046677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: PKSF_BACSU (Polyketide biosynthesis malonyl-ACP decarboxylase pksF OS=Bacillus subtilis GN=pksF PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = -1
Query:  479 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNP 877
            LV+E  E A++RG    A   G ++  D     DP  +G      I+ +LE A + PE+++YIN H T +  GD  E+ A++      +   INATKS+ GH L AAG +E I+ +  +    LHPS N  +P
Sbjct:  241 LVIERKETALRRGLKPYAALSGWSIKLDGNRNPDPSLEG--EIHVIQKALERARLLPEDIDYINPHGTGSFIGDEIELKALRAC--RLSHAYINATKSITGHGLSAAGIVEIISVLLQMKKSALHPSRNLDHP 369          
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: PKS16_DICDI (Probable polyketide synthase 16 OS=Dictyostelium discoideum GN=pks16 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = -1
Query:  458 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH----MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 880
            V +++    A+K G  I     GG+ N D Y+    +T P     G +  IE +L+ +GV+P ++ YI AH T T  GD  EI AI ++FK+       + I + KS IGH   AAG    I    ++    L P+I+   P P ++F+
Sbjct:  248 VCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNITQPSMKAQGEN--IEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFE 394          
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.608e-13
Identity = 53/172 (30.81%), Postives = 74/172 (43.02%), Query Frame = -1
Query:  458 VLVMESLEHAMKRGAPIIAEYLG------GAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKIN-------------------------ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 880
            V+V++SLE A   G  I     G      GA N D   +T P  +   ++  I  ++E A +SP ++ YI AH T T  GD  E+ A+ K+F N+   ++N                         + KS IGH   AAG    I     +    L PSIN  N  PS+ FD
Sbjct:  249 VVVLKSLEQAKLDGDRIYGVIKGVSSNEDGASNGDKNSLTTPSCEAQSIN--ISKAMEKASLSPSDIYYIEAHGTGTPVGDPIEVKALSKIFSNSNNNQLNNFSTDGNDNDDDDDDNTSPEPLLIGSFKSNIGHLESAAGIASLIKCCLMLKNRMLVPSINCSNLNPSIPFD 418          

HSP 2 Score: 23.8682 bits (50), Expect = 9.608e-13
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = -2
Query:  382 VNVAISNSFGFGGHN 426
            VN+ I NSFGFGG N
Sbjct:  437 VNIGI-NSFGFGGSN 450          
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: PKS17_DICDI (Probable polyketide synthase 17 OS=Dictyostelium discoideum GN=pks17 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = -1
Query:  458 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH----MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 880
            V +++    A+K G  I     GG+ N D Y+    +  P     G +  IE +L+ +GV+P ++ YI AH T T  GD  EI AI ++FK+       + I + KS IGH   AAG    I    ++    L P+I+   P P ++F+
Sbjct:  248 VCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGEN--IEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFE 394          
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: ERYA3_SACER (Erythronolide synthase, modules 5 and 6 OS=Saccharopolyspora erythraea GN=eryA PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 46/145 (31.72%), Postives = 70/145 (48.28%), Query Frame = -1
Query:  458 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF----KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 880
            VLV++ L  A + G P++A   G AVN D          G      I  +LE+AGV   +V+Y+ AH T T  GD  E++A+   +         + I + KS IGH   AAG    +  V A+  G +  +++   P P +E+D
Sbjct:  268 VLVLQRLSAARREGRPVLAVLAGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWD 412          
BLAST of CX046677 vs. ExPASy Swiss-Prot
Match: PKS24_DICDI (Probable polyketide synthase 24 OS=Dictyostelium discoideum GN=pks24 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = -1
Query:  461 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPR----ADGLGVSSCIESSLEDAG--VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEF 880
            V+V+++L+ A+K G  I     G + N D    +D         +  S  ++++++     V P +++Y+ AH T T  GD  E+  I KVFK+T    T + I + KS IGHC  A+G    I            P+I+   P P+++F
Sbjct:  260 VVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKF 409          
The following BLAST results are available for this feature:
BLAST of CX046677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PKSF_BACSU2.648e-1336.09Polyketide biosynthesis malonyl-ACP decarboxylase ... [more]
PKS16_DICDI5.900e-1332.89Probable polyketide synthase 16 OS=Dictyostelium d... [more]
PKS1_DICDI9.608e-1330.81Probable polyketide synthase 1 OS=Dictyostelium di... [more]
PKS17_DICDI2.928e-1232.21Probable polyketide synthase 17 OS=Dictyostelium d... [more]
ERYA3_SACER3.824e-1231.72Erythronolide synthase, modules 5 and 6 OS=Sacchar... [more]
PKS24_DICDI5.522e-1129.33Probable polyketide synthase 24 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9E09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9E09-J17-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046677 ID=CX046677; Name=CX046677; organism=Citrus sinensis; type=EST; length=880bp
TTTTAAATAAACCATAGCCCATCAGCTAAGATCTGAAATTCCCACATAAC
AAACAATGAAGAACAGAGCCACGAGTGATATTAATGCTAGACCTCGGCGG
CTCATTCTTCTGTCCACAGCATAATTAAAAATCTGACAAAATTTCATGCC
CTCTCAACTAGCCTCATAAATCCAATGGTTGAAAGGAGAAAATGGCTCAT
TATCCTGAACTAAAATCCAACTTACAATTATTACATAACTGTTACAAAAG
CCTCAAAATAAATATGCAGCAACTCAATAGACAGGATGATGCGGCTCCTT
GGCCAATTAATGACCAGATCTTCTAGACTTATGAACAGGCTGGATGATTC
ATGGTTTGAATGCAGAAAATGCAACGACAGAGTTGTGCCCTCCAAATCCA
AATGAATTAGAGATGGCAACATTCACTTCATGCTGCTGTTTTTTTGTTGG
CGACAGTGTCGAACTCAACTGAAGGTTCAGGGTTAAATTGATTAATGGAA
GGATGCAGCCATCCCGTGGTTATTGCCTTGACAGTGGCAATTGCTTCCAA
ACCCCCAGCTGCACCAAGGCAGTGCCCTATCATAGACTTCGTGGCATTGA
TTTTGATCCCTGTGGTGTTCTTGAACACCTTTTTAATAGCATTTATCTCA
GCCAGGTCACCAGCTAAAGTGGAAGTTGCGTGAGCATTTATGTAGTTGAC
CTCCTCAGGTGACACACCAGCATCTTCAAGGCTGCTCTCAATGCATGAAG
ACACTCCAAGTCCATCAGCTCTGGGGTCAGTCATATGATAAGCATCACAA
TTAACAGCACCCCCTAAGTACTCTGCTATGATCGGTGCACCTCGTTTCAT
TGCATGTTCCAAGCTCTCCATCACCAATAC
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