CX046624

Overview
NameCX046624
Unique NameCX046624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_GIBZE (COP9 signalosome complex subunit 5 OS=Gibberella zeae GN=RRI1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  476 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAE 811
            SSLD HLL+LLW+KYWV TLS +PL+ N DY   Q+ DL+ K+++A   ++ +R G  +      K  D  + K+ +++  I  ++  GL++  +K  LFN +       +E
Sbjct:  229 SSLDSHLLELLWHKYWVQTLSQNPLITNRDYGNKQLLDLSSKIKEATTGITRNRAGQGMMMGMSTKSSDKAVDKLAKEANLIASKERSGLIANQVKASLFNDLGSKANPTSE 340          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = -1
Query:  506 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAP-PPRRK-----------------------EEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNS 811
            S LD  +LDLLWNKYWV TLSS+ L+ N +Y   Q+ DL  KL  A   +S+S     + P  P  K                       EE++ L K+T++S++IT E  +G++SQ++K+ LFN+
Sbjct:  227 SKLDEKMLDLLWNKYWVATLSSNSLVSNLEYSTSQVQDLNAKLRAASQSISNSSSKLKLKPTQPTTKGKETTEGSDKKLKKGEKEFSGVEEEETPLNKVTQESSRITSEAENGIISQLLKEKLFNT 352          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans GN=rri1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  503 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPR----RKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 811
            S+LD  +L LLWNKYWV TLS SPL    DY + Q+ DL++K  +    +  +        PPR     +  D QL ++ +D  +I  E+V GL++  +K  LF  +
Sbjct:  228 SALDTEILSLLWNKYWVATLSQSPLFTTRDYGSKQMLDLSQKTRRVARGIESN--------PPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEVKMQLFQGI 326          
The following BLAST results are available for this feature:
BLAST of CX046624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CSN5_GIBZE2.751e-1435.71COP9 signalosome complex subunit 5 OS=Gibberella z... [more]
CSN5_CRYNE8.005e-1437.30COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]
CSN5_EMENI9.785e-1236.45COP9 signalosome complex subunit 5 OS=Emericella n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B12-D23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046624 ID=CX046624; Name=CX046624; organism=Citrus sinensis; type=EST; length=811bp
GTTCATTTAGGCTAAAGATGAGATCAAACCAAGTCCTCCTGAGTGACAGT
TTTGAGTCGGATGCCCAAAGAATTTACAATTCTTCCTTGATTCGTATTTG
ATTTGGACAGACAATAAAATAAACCAGGCACTCGACAACCATTGTCCTTA
GGTTTCATATCTAAATAATATTACGGGGCAAATATGGGGTCTCTAATGAC
GATTAACGTTGTCTAATTTTCCAACTTACAAATACCAAATAGTGCAAAAA
CTGGAATTCCGTAATAGATCCACTATGAATGCAACAAGGATTTACATTAG
GGCAGAAGGTAACAAAACTTTGGCAGTCTCAGCCTGAGATTCGTTGTAAT
GAATTTTGAAATAAAAATCTTGGTCTGGCAGGTGAAGGGAGCATGGAAGG
CAAAGGCTTCTACTTTCTTGCTGCACCATTAAGTTGCAAAAATCAGGATT
CAATCATAGGTTCAGGGTCAGATGGCTCAGCGTGAGTCTTGGTGGATTGT
CGAACAGAATTGAAAAGGATGTCTTTGATAACCTGTGACATTAGACCATG
AACCTGCTCAACAGTTATCTTCGCACTGTCACGAGTGATCTTAGCAAGCT
GTGAATCCTCCTCCTTCCTTCTTGGAGGGGGTGCTATTAAGGGCCCATAG
CGAGAGTGAGACAATTGATTCTCAGCTTGCTCCAGCTTTTCAGCTAAATC
CGAAATTTGTCCTGCAACATAGTCCCCATTACCAAGCAAAGGCGAAGATG
AAAGAGTATTCACCCAGTACTTGTTCCACAGCAGATCCAAAAGATGGCAA
TCAAGAGAGGA
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