DN618331

Overview
NameDN618331
Unique NameDN618331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.866e-49
Identity = 99/194 (51.03%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N +I   HF K WQ  V TWFNQP                I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.198e-48
Identity = 98/194 (50.52%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.749e-48
Identity = 98/194 (50.52%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 96/194 (49.48%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N ++   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+           +T++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 99/194 (51.03%), Postives = 126/194 (64.95%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N +I   HF K WQ  V TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.145e-47
Identity = 97/194 (50.00%), Postives = 126/194 (64.95%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I           +T++ K+FKA+  LR+ RAN R FG R K+A
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.234e-47
Identity = 94/195 (48.21%), Postives = 126/195 (64.62%), Query Frame = 2
Query:  101 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKK 685
            K NN+IPNGHF K WQ +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R+  +  G R K+
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIRAKR 196          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.243e-42
Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  116 IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 676
            +PN HF K WQ YVKTWFNQP                I PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PIT ++   +   +T++ K+F A+  L  ERA  R+ GAR
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPIT-QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 83/178 (46.63%), Postives = 115/178 (64.61%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 640
            N+V+ + HF+K WQ  VKTWFNQP                I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 2
Query:  104 HNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            HN V+ N HF+KHWQ  V+TWFNQP                +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R K A
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIRRKAA 199          
The following BLAST results are available for this feature:
BLAST of DN618331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK9.866e-4951.0360S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT2.198e-4850.5260S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE3.749e-4850.5260S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN6.395e-4849.4860S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN6.395e-4851.0360S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR4.145e-4750.0060S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SPOFR9.234e-4748.2160S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_SCHPO5.243e-4248.6660S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA3.399e-4146.6360S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI1.687e-4045.1860S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618331 ID=DN618331; Name=DN618331; organism=Citrus sinensis; type=EST; length=689bp
CCAAGCCTCACGCATCATATTCGTTCGTTTCGGCTTTGCTGCCGTCGAGA
CTGAGAGAAACGGAGATAGTCTTCTGCATTTCGCTCTGTAAACAAAAATG
AAGCACAACAATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGCAGAA
CTATGTCAAGACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGACGAG
TTGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGT
CCTCTTCGCCCCGTCGTTCATGGCCAGACTTTGAAATATAACATGAAATT
AAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGAATTC
CCAAGAAACTGGCTCCAACAATTGGCGTTTCAGTCGATCATCGACGCAAG
AACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTGAAGACTTA
CAAGGCCAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTTAAGGCTG
GTGATTCTGCTCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCT
TACATGCCCATTACTCTTGAGAAGCCTACTGTCGACCTTGTTAAGGTTAC
TCAAGATATGAAGTCCTTCAAGGCTTATGACAAGCTCCGGATTGAGCGTG
CGAACGAGCGCCATTTTGGTGCCAGGTTGAAGAAGGCTG
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