DN618330

Overview
NameDN618330
Unique NameDN618330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618330 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 3
Query:  489 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISL 629
            P + DWRE G V+PVKDQG CGSCW FSTTG+LE  + +  GK +SL
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSL 48          
BLAST of DN618330 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 3
Query:  288 EMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRH----RLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISL 629
            E  +R   + KNL  I   N +   G+ SY +G+N   D + EE   +    R+    N S T K +   T   LP++ DWRE G V+ VK QG CGSCW FS  G+LE       GK +SL
Sbjct:   42 EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIGYMGSLRIPRPWNRSGTLKSSSNQT---LPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSL 160          
BLAST of DN618330 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  267 KIYESVEEMKLRFATFSKNLDLIRSTNCKGLS----YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISL 629
            ++Y + EE + R A + KN+ +I+  N +  +    + + +N F D + EEF++   G         +   +     +P++ DWRE G V+PVK+QG CGSCW FS +G LE       GK ISL
Sbjct:   38 RLYGTNEE-EWRRAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISL 161          
BLAST of DN618330 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  258 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 590
            ++GK Y   EE +L+ A + KN  +I   N + L  R    + +N F D +  EF +   G  +     T          +P+  DWR+ G V+PVK+QGHC S W FS TGSLE
Sbjct:   35 KHGKTYNMNEE-RLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLE 148          
BLAST of DN618330 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 39/131 (29.77%), Postives = 62/131 (47.33%), Query Frame = 3
Query:  240 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN---HKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 599
            +  F +++ K Y + ++    F  F +NL  + + N        G+NKF+D     F     G   N   +T  N   ++L   V         PE+ DWR+   V+ VK+QG CGSCW F+  G++E+ Y
Sbjct:   33 YENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQY 163          
The following BLAST results are available for this feature:
BLAST of DN618330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CATL1_CHICK2.356e-1161.70Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATS_RAT4.019e-1138.52Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATL1_MOUSE5.250e-1134.40Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
TEST2_RAT6.856e-1136.52Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATV_NPVST8.954e-1129.77Viral cathepsin OS=Spodoptera litura multicapsid n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618330 ID=DN618330; Name=DN618330; organism=Citrus sinensis; type=EST; length=630bp
CGAAGCCCTTGAGTGCAGTGTGCTCTCTCCAAACAAAGCAGACACAATCA
TTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGTCATCTTGTTGCT
TTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTCGACGACTCCA
ATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGACCTCC
GTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTT
TGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCC
GGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACCAATTGT
AAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGGAGCTG
GGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTCTGCCA
CTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAA
GACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTG
TGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACC
ACCAGGCCTTTGGAAAGGGTATCTCTTTGT
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