DN618329

Overview
NameDN618329
Unique NameDN618329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618329 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = -2 
Query:  290 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 514
            + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  270 KLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359
[Close]
BLAST of DN618329 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = -2 
Query:  320 YPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 679
            YPY  K+  CK S    G   ++  +   G++  LQ+ +    P+SV  E    ++FY+SG++S+     T    NH  +AVG+   D    W+++NSWG  WG+ G  ++   +N CGI
Sbjct:  193 YPYVAKNQTCKQSRN--GTYFINGYSFVGGSQSNLQYYLNNY-PISVGVEA-SNWQFYRSGLFSNCSSNGT----NHYALAVGF---DSANNWIVQNSWGTQWGESGNIRL-YPQNTCGI 300
The following BLAST results are available for this feature:
BLAST of DN618329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
CATW_FELCA8.094e-1135.48Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATL3_PARTE8.094e-1132.50Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618329 ID=DN618329; Name=DN618329; organism=Citrus sinensis; type=EST; length=686bp
CCCCCTTTTTTTTTTCCTATAACAACTACCTTTGCATTGACAAAATATAT
ATAANCATCGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGA
TCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGAT
TATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACCATTC
TGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTG
CTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTG
GGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATC
TTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAG
CCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACGGCAT
GGTTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCA
CTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGG
TCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAA
TGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
CAGACACCATCTTTTCCGGTGTAGGGATATGCTTCC
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