CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROYA (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila yakuba GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.901e-39
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  493 PEVLKKKRNEVPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 658          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROER (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila erecta GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.901e-39
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  493 PEVLKKKRGEVPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 658          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_NEOFI (Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nip1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.789e-39
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = -1
Query:    4 NSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 447
            N   ++  L + ++KY D   +ARAMLC IY  AL D++  +RDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  471 NVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQKELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 618          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROPS (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.789e-39
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  496 PEVLKKKRGELPATTATSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 661          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROPE (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila persimilis GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.789e-39
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  496 PEVLKKKRGEVPATTATSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 661          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASPFU (Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus fumigatus GN=nip1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.789e-39
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = -1
Query:    4 NSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 447
            N   ++  L + ++KY D   +ARAMLC IY  AL D++  +RDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  471 NVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQKELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 618          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASPFC (Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=nip1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.789e-39
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = -1
Query:    4 NSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 447
            N   ++  L + ++KY D   +ARAMLC IY  AL D++  +RDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  471 NVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQKELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 618          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASPCL (Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus clavatus GN=nip1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.441e-39
Identity = 77/140 (55.00%), Postives = 102/140 (72.86%), Query Frame = -1
Query:    4 LVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 423
            L + +++Y D   +ARAMLC IY  AL D++  ARDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  480 LCNYLFQYSDGIIRARAMLCQIYFLALHDQYYRARDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRAGLIYEAQNTLSEVCGSGRQKELLAQGIILQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 619          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_COCIM (Eukaryotic translation initiation factor 3 subunit C OS=Coccidioides immitis GN=NIP1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.102e-38
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = -1
Query:    4 PENSRTMMDMLVSLI----YKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 453
            P + ++ + +LV  I    ++Y D   +ARAMLC IY  AL D++  ARDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQE+LER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  463 PRDMKSDVSLLVQTICNYLFQYSDGIIRARAMLCQIYFLALHDKYHRARDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRAGLIYEAQNTLSEVCGSGRQKELLAQGIILQRYSSVSPEQEKLERQRQLPFHMHINLELLECIYLTSSM 616          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_XENTR (Eukaryotic translation initiation factor 3 subunit C OS=Xenopus tropicalis GN=eif3c PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.440e-38
Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +MD L   IY K   +R +  A+LC IYHHAL + +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR GM  + H+ L ++ S G+ KELL QG+      E+  EQE++E+RRQ+P+HMHINLELLE V+L  A+L
Sbjct:  543 EDSAILMDRLCKYIYAKDRTDRIRTCAILCHIYHHALHNRWFQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIRDAHNALLDIQSSGRAKELLGQGLLMRTMQERNQEQEKIEKRRQIPFHMHINLELLECVYLVSAML 693          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_DROYA2.901e-3951.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROER2.901e-3951.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_NEOFI3.789e-3952.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROPS3.789e-3951.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROPE3.789e-3951.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASPFU3.789e-3952.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASPFC3.789e-3952.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASPCL8.441e-3955.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_COCIM1.102e-3851.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_XENTR1.440e-3852.98Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
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