CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_XENLA (Eukaryotic translation initiation factor 3 subunit C OS=Xenopus laevis GN=eif3c PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.440e-38
Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +MD L   IY K   +R +  A+LC IYHHAL + +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR GM  + H+ L ++ S G+ KELL QG+      E+  EQE++E+RRQ+P+HMHINLELLE V+L  A+L
Sbjct:  544 EDSAILMDRLCKYIYAKDRTDRIRTCAILCHIYHHALHNRWFQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIRDAHNALLDIQSSGRAKELLGQGLLMRTMQERNQEQEKIEKRRQIPFHMHINLELLECVYLVSAML 694          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_EMENI (Eukaryotic translation initiation factor 3 subunit C OS=Emericella nidulans GN=nip1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.880e-38
Identity = 77/148 (52.03%), Postives = 106/148 (71.62%), Query Frame = -1
Query:    4 NSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 447
            +++T++  L + +++  D   +ARAML  IY  AL D++  ARDL+LMSHL +N+   DV SQILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  470 DAQTLVQTLCNYLFRNSDGILRARAMLAQIYFLALHDQYYRARDLMLMSHLSENIANFDVSSQILFNRTLVQIGLCAFRAGLIYEAQNTLSEICGSGRQKELLAQGIILQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 617          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROVI (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila virilis GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.880e-38
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = -1
Query:    1 VPRKPTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 474
            +P   T P +S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  507 LPAAGTAP-SSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 664          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROMO (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila mojavensis GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.880e-38
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = -1
Query:    1 VPRKPTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 474
            +P   T P +S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  507 LPAAGTAP-SSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 664          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROGR (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila grimshawi GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.880e-38
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            ++S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  525 QSSVEVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 675          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASPOR (Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus oryzae GN=nip1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.456e-38
Identity = 76/144 (52.78%), Postives = 103/144 (71.53%), Query Frame = -1
Query:    4 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 435
            ++  L + ++ Y D   +ARAMLC IY  AL D++  +RDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  474 LVQTLCNYLFTYSDGIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVNTQILFNRTLVQIGLCAFRAGLIYEAQNTLSEVCGSGRQKELLAQGIILQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 617          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DANRE (Eukaryotic translation initiation factor 3 subunit C OS=Danio rerio GN=eif3c PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.208e-38
Identity = 79/151 (52.32%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            ++S  +MD L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR GM  + H+ L ++ S G+ KELL QG+      E+  EQE++E+RRQ+P+HMHINLELLE V+L  A+L
Sbjct:  541 DDSAIIMDRLCKFIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIKDAHNALLDIQSSGRAKELLGQGLLMRNMQERNAEQEKIEKRRQVPFHMHINLELLECVYLVSAML 691          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASPTN (Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nip1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.208e-38
Identity = 75/145 (51.72%), Postives = 105/145 (72.41%), Query Frame = -1
Query:    4 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAI 438
            +++  L + ++++ D   +ARAMLC IY  AL D++  +RDL+LMSHL +N+   DV +QILFNR + Q+GLCAFR G+  E  + LSE+   G+ KELLAQGI   RY   +PEQERLER+RQ+P+HMHINLELLE ++L  ++
Sbjct:  476 SLVQTLCNYLFRHSDGILRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENIANFDVSTQILFNRTLVQIGLCAFRAGLVYEAQNTLSEVCGSGRQKELLAQGIILQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSM 620          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_MAGGR (Eukaryotic translation initiation factor 3 subunit C OS=Magnaporthe grisea GN=NIP1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 74/159 (46.54%), Postives = 114/159 (71.70%), Query Frame = -1
Query:    1 LVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477
            + PR+ T    +  ++++L + ++   +   +ARAMLC IY  AL D++  +RD++LMSHLQ+ +   DVL+QIL+NR + Q+GLCAFR G+  +  + L ++   G+ KELLAQG+   R+++ +PEQERLER+RQ+P+HMHINLELLE V+L C++L
Sbjct:  469 ITPREQTV--EAAQLVNVLCNYLFANSEGIHRARAMLCQIYFLALHDDYYKSRDMMLMSHLQETISSFDVLTQILYNRTLVQVGLCAFRKGLVYDAQNTLQDICGSGRQKELLAQGVMIQRFNQVSPEQERLERQRQLPFHMHINLELLECVYLTCSML 625          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ANOGA (Eukaryotic translation initiation factor 3 subunit C OS=Anopheles gambiae GN=eIF3-S8 PE=3 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 86/163 (52.76%), Postives = 109/163 (66.87%), Query Frame = -1
Query:    1 LVPRKPTFPENSRTM---MDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477
            L  RK   P N+ T    MD L   IY K   +R + RA+L  I+HHAL D +  ARDL+LMSHLQ+ +   D  +QIL+NR MA LGLCAFR G   + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  515 LKKRKGQLPANTITSVEEMDKLCRYIYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPATQILYNRMMANLGLCAFRHGNIKDAHLCLVDLMMTGKPKELLAQGLVPQRQHERSLEQEKIEKQRQMPFHMHINLELLECVYLVSAML 677          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_XENLA1.440e-3852.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_EMENI1.880e-3852.03Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROVI1.880e-3852.83Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROMO1.880e-3852.83Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROGR1.880e-3853.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASPOR2.456e-3852.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DANRE3.208e-3852.32Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASPTN3.208e-3851.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_MAGGR4.189e-3846.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ANOGA4.189e-3852.76Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
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