CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_NEUCR (Eukaryotic translation initiation factor 3 subunit C OS=Neurospora crassa GN=nip-1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.471e-38
Identity = 75/160 (46.88%), Postives = 113/160 (70.62%), Query Frame = -1
Query:    1 ELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 480
            E+ PR  +   ++  ++++L + +++  +   +ARAMLC IY  AL DE+  +RDL+L SHLQ+ +   D+ +QIL+NR + Q+GLCAFR G+  +  + L E+   G+ KELLAQG+   RY + TPEQERLE++RQ+P+HMHINLELLE V+L C++L
Sbjct:  475 EITPRSQS--GDAGKLINILSNYLFENSEGIIRARAMLCQIYFLALHDEYYKSRDLMLTSHLQETIANFDIATQILYNRTLVQVGLCAFRKGLVYDAQNTLQEICGSGRQKELLAQGVMIQRYSQVTPEQERLEKQRQLPFHMHINLELLECVYLTCSML 632          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_RAT (Eukaryotic translation initiation factor 3 subunit C OS=Rattus norvegicus GN=Eif3c PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +M+ L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR G+  + H+ L ++ S G+ KELL QG+      E+  EQE++ERRRQ+P+H+HINLELLE V+L  A+L
Sbjct:  540 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 690          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PONAB (Eukaryotic translation initiation factor 3 subunit C OS=Pongo abelii GN=EIF3C PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +M+ L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR G+  + H+ L ++ S G+ KELL QG+      E+  EQE++ERRRQ+P+H+HINLELLE V+L  A+L
Sbjct:  542 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTMDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 692          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_MOUSE (Eukaryotic translation initiation factor 3 subunit C OS=Mus musculus GN=Eif3c PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +M+ L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR G+  + H+ L ++ S G+ KELL QG+      E+  EQE++ERRRQ+P+H+HINLELLE V+L  A+L
Sbjct:  540 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 690          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_HUMAN (Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +M+ L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR G+  + H+ L ++ S G+ KELL QG+      E+  EQE++ERRRQ+P+H+HINLELLE V+L  A+L
Sbjct:  542 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 692          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_BOVIN (Eukaryotic translation initiation factor 3 subunit C OS=Bos taurus GN=EIF3C PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+S  +M+ L   IY K   +R +  A+LC IYHHAL   +  ARDL+LMSHLQDN+Q  D   QIL+NR M QLG+CAFR G+  + H+ L ++ S G+ KELL QG+      E+  EQE++ERRRQ+P+H+HINLELLE V+L  A+L
Sbjct:  541 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 691          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CAEEL (Eukaryotic translation initiation factor 3 subunit C OS=Caenorhabditis elegans GN=eif-3.C PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37
Identity = 80/151 (52.98%), Postives = 108/151 (71.52%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIYKYGDE-RTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E++  +MD L + IY   DE R + RAMLC +Y+ A+ D++  ARDLLLMSH+Q  V   DV +QIL+NR + QLGLCAFR G   E H  LSE+ +  + KELLAQ +  +R HEKT EQE+++R RQ+PYHMHIN+EL+E V+L C++L
Sbjct:  500 EDAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVG-TRQHEKTAEQEKIDRSRQVPYHMHINVELMECVYLICSML 649          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CULQU (Eukaryotic translation initiation factor 3 subunit C OS=Culex quinquefasciatus GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.049e-37
Identity = 84/163 (51.53%), Postives = 110/163 (67.48%), Query Frame = -1
Query:    1 LVPRKPTFPENSRTMMDMLVSL---IY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477
            L  RK   P +S T +D +  L   IY K   +R + RA+L  I+HHAL D +  ARDL+LMSHLQ+ +   D  +QIL+NR MA LGLCAFR G   + H CL +L   GK KELLAQG+   R +E++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  493 LKKRKAQLPASSLTSVDEMERLCRFIYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPPTQILYNRTMANLGLCAFRHGNIKDAHQCLVDLMMTGKPKELLAQGLVPQRQNERSLEQEKVEKQRQMPFHMHINLELLECVYLVSAML 655          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_SCHPO (Eukaryotic translation initiation factor 3 subunit C OS=Schizosaccharomyces pombe GN=nip1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 79/163 (48.47%), Postives = 107/163 (65.64%), Query Frame = -1
Query:    1 PTF-----PENSRTMMDMLVS----LIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 462
            PTF     P  + T  D+L+      +Y  G    + RAMLC IYH AL + F  ARD+LLMSHLQD+V   D+ +QIL NR M Q+GLCAFR GM  E    L ++ + G+VKELL QGI   ++ + TP+Q+RL+++  +P+HMHINLELLE V+L C++L
Sbjct:  538 PTFDLTITPRATTTTPDILIHSLCVYLYNNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQILHNRTMVQIGLCAFRNGMVQETQYALQDISTTGRVKELLGQGIQAPKFGQFTPDQDRLDKQLVLPFHMHINLELLECVYLTCSML 700          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CHAGB (Eukaryotic translation initiation factor 3 subunit C OS=Chaetomium globosum GN=NIP1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.348e-36
Identity = 72/145 (49.66%), Postives = 104/145 (71.72%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 435
            +M  L + ++   +   +ARAML  IY  AL DE+  ARD++L SHLQ+++   DV +QIL+NR + Q+GLCAFR G+  +  + L ++   G+ KELLAQG+   RY++ TPEQERLE++RQ+P+HMHINLELLE V+L C++L
Sbjct:  479 LMYTLCNYLFDNSEGIIRARAMLSQIYFLALHDEYYKARDMMLTSHLQESIANFDVATQILYNRTLVQVGLCAFRRGLVYDAQNTLQDICGSGRQKELLAQGVMMQRYNQVTPEQERLEKQRQLPFHMHINLELLECVYLTCSML 623          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_NEUCR5.471e-3846.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_RAT9.333e-3851.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_PONAB9.333e-3851.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_MOUSE9.333e-3851.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_HUMAN9.333e-3851.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_BOVIN9.333e-3851.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CAEEL4.632e-3752.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CULQU6.049e-3751.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_SCHPO1.032e-3648.47Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CHAGB1.348e-3649.66Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
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