CX046616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_NEUCR (Eukaryotic translation initiation factor 3 subunit C OS=Neurospora crassa GN=nip-1 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.471e-38 Identity = 75/160 (46.88%), Postives = 113/160 (70.62%), Query Frame = -1 Query: 1 ELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 480 E+ PR + ++ ++++L + +++ + +ARAMLC IY AL DE+ +RDL+L SHLQ+ + D+ +QIL+NR + Q+GLCAFR G+ + + L E+ G+ KELLAQG+ RY + TPEQERLE++RQ+P+HMHINLELLE V+L C++L Sbjct: 475 EITPRSQS--GDAGKLINILSNYLFENSEGIIRARAMLCQIYFLALHDEYYKSRDLMLTSHLQETIANFDIATQILYNRTLVQVGLCAFRKGLVYDAQNTLQEICGSGRQKELLAQGVMIQRYSQVTPEQERLEKQRQLPFHMHINLELLECVYLTCSML 632
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_RAT (Eukaryotic translation initiation factor 3 subunit C OS=Rattus norvegicus GN=Eif3c PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38 Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E+S +M+ L IY K +R + A+LC IYHHAL + ARDL+LMSHLQDN+Q D QIL+NR M QLG+CAFR G+ + H+ L ++ S G+ KELL QG+ E+ EQE++ERRRQ+P+H+HINLELLE V+L A+L Sbjct: 540 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 690
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PONAB (Eukaryotic translation initiation factor 3 subunit C OS=Pongo abelii GN=EIF3C PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38 Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E+S +M+ L IY K +R + A+LC IYHHAL + ARDL+LMSHLQDN+Q D QIL+NR M QLG+CAFR G+ + H+ L ++ S G+ KELL QG+ E+ EQE++ERRRQ+P+H+HINLELLE V+L A+L Sbjct: 542 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTMDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 692
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_MOUSE (Eukaryotic translation initiation factor 3 subunit C OS=Mus musculus GN=Eif3c PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38 Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E+S +M+ L IY K +R + A+LC IYHHAL + ARDL+LMSHLQDN+Q D QIL+NR M QLG+CAFR G+ + H+ L ++ S G+ KELL QG+ E+ EQE++ERRRQ+P+H+HINLELLE V+L A+L Sbjct: 540 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 690
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_HUMAN (Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38 Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E+S +M+ L IY K +R + A+LC IYHHAL + ARDL+LMSHLQDN+Q D QIL+NR M QLG+CAFR G+ + H+ L ++ S G+ KELL QG+ E+ EQE++ERRRQ+P+H+HINLELLE V+L A+L Sbjct: 542 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 692
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_BOVIN (Eukaryotic translation initiation factor 3 subunit C OS=Bos taurus GN=EIF3C PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38 Identity = 78/151 (51.66%), Postives = 104/151 (68.87%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E+S +M+ L IY K +R + A+LC IYHHAL + ARDL+LMSHLQDN+Q D QIL+NR M QLG+CAFR G+ + H+ L ++ S G+ KELL QG+ E+ EQE++ERRRQ+P+H+HINLELLE V+L A+L Sbjct: 541 EDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAML 691
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CAEEL (Eukaryotic translation initiation factor 3 subunit C OS=Caenorhabditis elegans GN=eif-3.C PE=2 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37 Identity = 80/151 (52.98%), Postives = 108/151 (71.52%), Query Frame = -1 Query: 1 ENSRTMMDMLVSLIYKYGDE-RTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450 E++ +MD L + IY DE R + RAMLC +Y+ A+ D++ ARDLLLMSH+Q V DV +QIL+NR + QLGLCAFR G E H LSE+ + + KELLAQ + +R HEKT EQE+++R RQ+PYHMHIN+EL+E V+L C++L Sbjct: 500 EDAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVG-TRQHEKTAEQEKIDRSRQVPYHMHINVELMECVYLICSML 649
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CULQU (Eukaryotic translation initiation factor 3 subunit C OS=Culex quinquefasciatus GN=eIF3-S8 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 6.049e-37 Identity = 84/163 (51.53%), Postives = 110/163 (67.48%), Query Frame = -1 Query: 1 LVPRKPTFPENSRTMMDMLVSL---IY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477 L RK P +S T +D + L IY K +R + RA+L I+HHAL D + ARDL+LMSHLQ+ + D +QIL+NR MA LGLCAFR G + H CL +L GK KELLAQG+ R +E++ EQE++E++RQMP+HMHINLELLE V+L A+L Sbjct: 493 LKKRKAQLPASSLTSVDEMERLCRFIYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPPTQILYNRTMANLGLCAFRHGNIKDAHQCLVDLMMTGKPKELLAQGLVPQRQNERSLEQEKVEKQRQMPFHMHINLELLECVYLVSAML 655
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_SCHPO (Eukaryotic translation initiation factor 3 subunit C OS=Schizosaccharomyces pombe GN=nip1 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36 Identity = 79/163 (48.47%), Postives = 107/163 (65.64%), Query Frame = -1 Query: 1 PTF-----PENSRTMMDMLVS----LIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 462 PTF P + T D+L+ +Y G + RAMLC IYH AL + F ARD+LLMSHLQD+V D+ +QIL NR M Q+GLCAFR GM E L ++ + G+VKELL QGI ++ + TP+Q+RL+++ +P+HMHINLELLE V+L C++L Sbjct: 538 PTFDLTITPRATTTTPDILIHSLCVYLYNNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQILHNRTMVQIGLCAFRNGMVQETQYALQDISTTGRVKELLGQGIQAPKFGQFTPDQDRLDKQLVLPFHMHINLELLECVYLTCSML 700
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CHAGB (Eukaryotic translation initiation factor 3 subunit C OS=Chaetomium globosum GN=NIP1 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.348e-36 Identity = 72/145 (49.66%), Postives = 104/145 (71.72%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 435 +M L + ++ + +ARAML IY AL DE+ ARD++L SHLQ+++ DV +QIL+NR + Q+GLCAFR G+ + + L ++ G+ KELLAQG+ RY++ TPEQERLE++RQ+P+HMHINLELLE V+L C++L Sbjct: 479 LMYTLCNYLFDNSEGIIRARAMLSQIYFLALHDEYYKARDMMLTSHLQESIANFDVATQILYNRTLVQVGLCAFRRGLVYDAQNTLQDICGSGRQKELLAQGVMMQRYNQVTPEQERLEKQRQLPFHMHINLELLECVYLTCSML 623 The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bpback to top |