CX046616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_AEDAE (Eukaryotic translation initiation factor 3 subunit C OS=Aedes aegypti GN=eIF3-S8 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.348e-36 Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = -1 Query: 1 LVPRKPTFPENSRTM---MDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477 L +K P ++ T MD L +Y K +R + RA+L I+HHAL D + ARDL+LMSHLQ+ + D +QIL+NR MA LGLCAFR G + H CL +L GK KELLAQG+ R +E++ EQE++E++RQMP+HMHINLELLE V+L A+L Sbjct: 498 LKKKKKELPASTLTSVDEMDRLCRFVYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPPTQILYNRTMANLGLCAFRHGNVKDAHQCLVDLMMTGKPKELLAQGLVPQRQNERSLEQEKVEKQRQMPFHMHINLELLECVYLVSAML 660
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_USTMA (Eukaryotic translation initiation factor 3 subunit C OS=Ustilago maydis GN=NIP1 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36 Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = -1 Query: 1 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGI-SQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 393 ER + RA+LC IY HAL ++ ARD+ LMSHLQD +Q DV +QIL+NR + Q+G+CAFR G+ E L E+++ G+VKELLAQG+ Q+++ TPEQE+LER+RQ+P+HMHINLELLE ++L ++L Sbjct: 526 ERPRTRAVLCHIYFHALHADYHVARDMFLMSHLQDAIQLADVATQILYNRVVVQIGICAFRNGLIKESQVALQEIFATGRVKELLAQGVQKQNQFSTVTPEQEKLERQRQLPFHMHINLELLECIYLISSML 657
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CAEBR (Eukaryotic translation initiation factor 3 subunit C OS=Caenorhabditis briggsae GN=eif-3.C PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.735e-36 Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = -1 Query: 1 MDMLVSLIYKYGDE-RTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 432 MD L + IY DE R + RAMLC +Y A+ D++ ARDLLLMSH+Q V DV +QIL+NR + QLGLCAFR G E H LSE+ + + KELLAQ + +R HEKT EQE+++R RQ+PYHMHIN+EL+E V+L C++L Sbjct: 501 MDYLCNKIYTLDDEKRLRQRAMLCHVYFLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVG-TRPHEKTAEQEKIDRSRQVPYHMHINVELMECVYLICSML 644
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DICDI (Eukaryotic translation initiation factor 3 subunit C OS=Dictyostelium discoideum GN=eif3c PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.630e-32 Identity = 76/147 (51.70%), Postives = 100/147 (68.03%), Query Frame = -1 Query: 1 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGIS-QSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 438 T+M L S +YK+GDER AR +LC+IY +A+ ++F ARD++LMSHLQDN MDV +QILFNRAM QLGLCAFR G E +C+ E G K+LLAQG+S QS+ EK +E E R +P HM I ++L+E V+L +L Sbjct: 518 TLMSKLSSFVYKFGDERLNARTILCNIYFNAINNKFHEARDMMLMSHLQDNPTLMDVSTQILFNRAMVQLGLCAFRCGYIQEAQNCVVEF--SGLRKDLLAQGLSVQSKTAEKDTVREVEETTRILPAHMWIPIDLIETVNLISGML 662
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CRYNE (Eukaryotic translation initiation factor 3 subunit C OS=Cryptococcus neoformans GN=NIP1 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 1 LVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYH-EKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 423 L IY+ +ARA+L I++ AL + ARDLLLMSHLQD + DV +QIL+NRA+ Q+GL AFR+G E + LSE++S + KELLAQ + RY+ + +PEQE LE+RR +P+HMH+N+ELLEA +L +L Sbjct: 504 LAVFIYQSDAPVLRARAILYHIFNQALHGRYHQARDLLLMSHLQDTISHADVTTQILYNRAVMQVGLAAFRLGFIPECQTILSEMFSTLRQKELLAQSV--QRYNIQLSPEQELLEKRRLLPFHMHLNVELLEAAYLTSCML 643
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YARLI (Eukaryotic translation initiation factor 3 subunit C OS=Yarrowia lipolytica GN=NIP1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27 Identity = 62/146 (42.47%), Postives = 94/146 (64.38%), Query Frame = -1 Query: 1 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 438 T++ + S++YK + + +AML +YH+AL DE+ ARD+ LMSHLQ ++ + Q+LFNR + QLGLCAFR G+ AE L E+ S ++KELL QG++ K + ++++R +P+H HINLELLE V L ++L Sbjct: 485 TLISNMCSVLYKQSNTVFRTKAMLAHVYHYALNDEYYKARDMFLMSHLQSSIASAEPQLQVLFNRTLVQLGLCAFRSGLIAEAQQSLQEVCSSPRLKELLGQGLA------KYAQAGVVDKQRVLPFHTHINLELLECVFLCSSLL 624
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PICGU (Eukaryotic translation initiation factor 3 subunit C OS=Pichia guilliermondii GN=NIP1 PE=3 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 4.497e-24 Identity = 55/126 (43.65%), Postives = 82/126 (65.08%), Query Frame = -1 Query: 1 AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERL-ERRRQMPYHMHINLELLEAVHLNCAIL 375 A+L +Y+HA+ +++S ARD+ L S + + D Q+L+NRAM QLGL AFR G E H L+E+ + ++KELL QG ++ K P Q + E++R +P+HMHINLELLE V + C++L Sbjct: 485 ALLFSVYYHAVNNDYSVARDMFLSSQVHQGINNADSSIQVLYNRAMVQLGLSAFRYGNIEESHQALNEIANSQRLKELLGQG-----FNSKYPSQATVAEKQRLLPFHMHINLELLECVFMTCSLL 605
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DEBHA (Eukaryotic translation initiation factor 3 subunit C OS=Debaryomyces hansenii GN=NIP1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22 Identity = 51/126 (40.48%), Postives = 82/126 (65.08%), Query Frame = -1 Query: 1 AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQ-ERLERRRQMPYHMHINLELLEAVHLNCAIL 375 A+LC IY++A+ +++ ARDL L SH+ + + Q+++NRA+ QLGL AF+ G+ E H L+E+ + ++KELL QG ++ K P Q E+++ +P+HMHINLELLE V + ++L Sbjct: 496 ALLCSIYYYAINNQYVKARDLFLSSHIYSTIHNSESSLQVMYNRALVQLGLSAFKAGVIEESHQALNEIANSQRLKELLGQG-----FNSKYPSQATTAEKQKLLPFHMHINLELLECVFMTSSLL 616
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YEAST (Eukaryotic translation initiation factor 3 subunit C OS=Saccharomyces cerevisiae GN=NIP1 PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22 Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 435 ++D L +++ K + + RA+L +IY+ AL +F TA+D+LL S +Q N+ Q D QILFNR + QLGL AF++ + E H L++L S ++E+L Q + ER RQ +PYH HINL+L++ V L C++L Sbjct: 482 LIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLL 627
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YEAS7 (Eukaryotic translation initiation factor 3 subunit C OS=Saccharomyces cerevisiae (strain YJM789) GN=NIP1 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22 Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 435 ++D L +++ K + + RA+L +IY+ AL +F TA+D+LL S +Q N+ Q D QILFNR + QLGL AF++ + E H L++L S ++E+L Q + ER RQ +PYH HINL+L++ V L C++L Sbjct: 482 LIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLL 627 The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bpback to top |