CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_AEDAE (Eukaryotic translation initiation factor 3 subunit C OS=Aedes aegypti GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.348e-36
Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = -1
Query:    1 LVPRKPTFPENSRTM---MDMLVSLIY-KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 477
            L  +K   P ++ T    MD L   +Y K   +R + RA+L  I+HHAL D +  ARDL+LMSHLQ+ +   D  +QIL+NR MA LGLCAFR G   + H CL +L   GK KELLAQG+   R +E++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  498 LKKKKKELPASTLTSVDEMDRLCRFVYAKDQTDRLRTRAILSHIFHHALHDNWFQARDLVLMSHLQETIHHSDPPTQILYNRTMANLGLCAFRHGNVKDAHQCLVDLMMTGKPKELLAQGLVPQRQNERSLEQEKVEKQRQMPFHMHINLELLECVYLVSAML 660          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_USTMA (Eukaryotic translation initiation factor 3 subunit C OS=Ustilago maydis GN=NIP1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36
Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = -1
Query:    1 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGI-SQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 393
            ER + RA+LC IY HAL  ++  ARD+ LMSHLQD +Q  DV +QIL+NR + Q+G+CAFR G+  E    L E+++ G+VKELLAQG+  Q+++   TPEQE+LER+RQ+P+HMHINLELLE ++L  ++L
Sbjct:  526 ERPRTRAVLCHIYFHALHADYHVARDMFLMSHLQDAIQLADVATQILYNRVVVQIGICAFRNGLIKESQVALQEIFATGRVKELLAQGVQKQNQFSTVTPEQEKLERQRQLPFHMHINLELLECIYLISSML 657          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CAEBR (Eukaryotic translation initiation factor 3 subunit C OS=Caenorhabditis briggsae GN=eif-3.C PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.735e-36
Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = -1
Query:    1 MDMLVSLIYKYGDE-RTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 432
            MD L + IY   DE R + RAMLC +Y  A+ D++  ARDLLLMSH+Q  V   DV +QIL+NR + QLGLCAFR G   E H  LSE+ +  + KELLAQ +  +R HEKT EQE+++R RQ+PYHMHIN+EL+E V+L C++L
Sbjct:  501 MDYLCNKIYTLDDEKRLRQRAMLCHVYFLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVG-TRPHEKTAEQEKIDRSRQVPYHMHINVELMECVYLICSML 644          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DICDI (Eukaryotic translation initiation factor 3 subunit C OS=Dictyostelium discoideum GN=eif3c PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.630e-32
Identity = 76/147 (51.70%), Postives = 100/147 (68.03%), Query Frame = -1
Query:    1 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGIS-QSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 438
            T+M  L S +YK+GDER  AR +LC+IY +A+ ++F  ARD++LMSHLQDN   MDV +QILFNRAM QLGLCAFR G   E  +C+ E    G  K+LLAQG+S QS+  EK   +E  E  R +P HM I ++L+E V+L   +L
Sbjct:  518 TLMSKLSSFVYKFGDERLNARTILCNIYFNAINNKFHEARDMMLMSHLQDNPTLMDVSTQILFNRAMVQLGLCAFRCGYIQEAQNCVVEF--SGLRKDLLAQGLSVQSKTAEKDTVREVEETTRILPAHMWIPIDLIETVNLISGML 662          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CRYNE (Eukaryotic translation initiation factor 3 subunit C OS=Cryptococcus neoformans GN=NIP1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:    1 LVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYH-EKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 423
            L   IY+      +ARA+L  I++ AL   +  ARDLLLMSHLQD +   DV +QIL+NRA+ Q+GL AFR+G   E  + LSE++S  + KELLAQ +   RY+ + +PEQE LE+RR +P+HMH+N+ELLEA +L   +L
Sbjct:  504 LAVFIYQSDAPVLRARAILYHIFNQALHGRYHQARDLLLMSHLQDTISHADVTTQILYNRAVMQVGLAAFRLGFIPECQTILSEMFSTLRQKELLAQSV--QRYNIQLSPEQELLEKRRLLPFHMHLNVELLEAAYLTSCML 643          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YARLI (Eukaryotic translation initiation factor 3 subunit C OS=Yarrowia lipolytica GN=NIP1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 62/146 (42.47%), Postives = 94/146 (64.38%), Query Frame = -1
Query:    1 TMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 438
            T++  + S++YK  +   + +AML  +YH+AL DE+  ARD+ LMSHLQ ++   +   Q+LFNR + QLGLCAFR G+ AE    L E+ S  ++KELL QG++      K  +   ++++R +P+H HINLELLE V L  ++L
Sbjct:  485 TLISNMCSVLYKQSNTVFRTKAMLAHVYHYALNDEYYKARDMFLMSHLQSSIASAEPQLQVLFNRTLVQLGLCAFRSGLIAEAQQSLQEVCSSPRLKELLGQGLA------KYAQAGVVDKQRVLPFHTHINLELLECVFLCSSLL 624          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PICGU (Eukaryotic translation initiation factor 3 subunit C OS=Pichia guilliermondii GN=NIP1 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.497e-24
Identity = 55/126 (43.65%), Postives = 82/126 (65.08%), Query Frame = -1
Query:    1 AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERL-ERRRQMPYHMHINLELLEAVHLNCAIL 375
            A+L  +Y+HA+ +++S ARD+ L S +   +   D   Q+L+NRAM QLGL AFR G   E H  L+E+ +  ++KELL QG     ++ K P Q  + E++R +P+HMHINLELLE V + C++L
Sbjct:  485 ALLFSVYYHAVNNDYSVARDMFLSSQVHQGINNADSSIQVLYNRAMVQLGLSAFRYGNIEESHQALNEIANSQRLKELLGQG-----FNSKYPSQATVAEKQRLLPFHMHINLELLECVFMTCSLL 605          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DEBHA (Eukaryotic translation initiation factor 3 subunit C OS=Debaryomyces hansenii GN=NIP1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 51/126 (40.48%), Postives = 82/126 (65.08%), Query Frame = -1
Query:    1 AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQ-ERLERRRQMPYHMHINLELLEAVHLNCAIL 375
            A+LC IY++A+ +++  ARDL L SH+   +   +   Q+++NRA+ QLGL AF+ G+  E H  L+E+ +  ++KELL QG     ++ K P Q    E+++ +P+HMHINLELLE V +  ++L
Sbjct:  496 ALLCSIYYYAINNQYVKARDLFLSSHIYSTIHNSESSLQVMYNRALVQLGLSAFKAGVIEESHQALNEIANSQRLKELLGQG-----FNSKYPSQATTAEKQKLLPFHMHINLELLECVFMTSSLL 616          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YEAST (Eukaryotic translation initiation factor 3 subunit C OS=Saccharomyces cerevisiae GN=NIP1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 435
            ++D L +++ K  +   + RA+L +IY+ AL  +F TA+D+LL S +Q N+ Q D   QILFNR + QLGL AF++ +  E H  L++L S   ++E+L Q          +      ER RQ +PYH HINL+L++ V L C++L
Sbjct:  482 LIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLL 627          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_YEAS7 (Eukaryotic translation initiation factor 3 subunit C OS=Saccharomyces cerevisiae (strain YJM789) GN=NIP1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 435
            ++D L +++ K  +   + RA+L +IY+ AL  +F TA+D+LL S +Q N+ Q D   QILFNR + QLGL AF++ +  E H  L++L S   ++E+L Q          +      ER RQ +PYH HINL+L++ V L C++L
Sbjct:  482 LIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLL 627          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_AEDAE1.348e-3650.31Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_USTMA3.002e-3654.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CAEBR8.735e-3654.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DICDI2.630e-3251.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CRYNE2.722e-2949.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_YARLI1.143e-2742.47Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_PICGU4.497e-2443.65Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DEBHA1.447e-2240.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_YEAST3.223e-2239.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_YEAS73.223e-2239.04Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
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