CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CANAL (Eukaryotic translation initiation factor 3 subunit C OS=Candida albicans GN=NIP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 55/147 (37.41%), Postives = 86/147 (58.50%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKAR-AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQER-LERRRQMPYHMHINLELLEAVHLNCAIL 435
            ++D L   + K    +T  + A+L  IY++A+  ++  A++L L S    N+   +   Q+ +NRA+ QLGL AFR G   E H  L+E+ +  + KELL QG     ++ K P Q   LER++ +P+H HINLELLE V + C++L
Sbjct:  476 VIDQLTEFLQKQQKNKTYGKHAILFSIYYYAVNSQYEKAKELFLRSQFYSNINSAESSLQVQYNRALVQLGLSAFRAGSIEESHKILNEIVNSQRSKELLGQG-----FNSKFPNQATVLERQKLLPFHQHINLELLECVFMTCSLL 617          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PICST (Eukaryotic translation initiation factor 3 subunit C OS=Pichia stipitis GN=NIP1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.497e-19
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQ-ERLERRRQMPYHMHINLELLEAVHLNCAIL 435
            +++ L S + K+ +      A+L  +Y++A+ + ++ A++L L S + + +   D   Q+ +NRA+ QLGL AFR G   E H  L+E+ +  + KELL QG     ++ K P Q   +E+ + +P+H HINLELLE V+  C++L
Sbjct:  464 LIEGLSSFLTKHKNPVYAKHALLFSVYYYAVNNNYNRAKELFLDSQIFNKIHHADSSLQVQYNRAIVQLGLSAFRNGAVEESHKVLNEIVNSQRSKELLGQG-----FNSKYPNQATTVEKAKLLPFHQHINLELLECVYSTCSLL 604          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_LODEL (Eukaryotic translation initiation factor 3 subunit C OS=Lodderomyces elongisporus GN=NIP1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = -1
Query:    1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQER-LERRRQMPYHMHINLELLEAVHLNCAIL 378
            +A+L  IY++A+  +++ A++L L +H   +    D   Q+ +NRA+ QLGL AFR G   E H  L+E+ +  + KELL QG     ++ K P Q   +E++R +P+H HINLELLE V++ C++L
Sbjct:  458 QALLYSIYYYAVNGDYNKAKELFLSAHFNLS----DSALQVSYNRALVQLGLSAFRSGAIEESHKILNEMVNSQRSKELLGQG-----FNSKFPNQATVVEKQRLLPFHQHINLELLECVYMTCSLL 575          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_VANPO (Eukaryotic translation initiation factor 3 subunit C OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NIP1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 46/145 (31.72%), Postives = 81/145 (55.86%), Query Frame = -1
Query:    1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 435
            ++  L   + K  ++  + RA+L ++Y+ AL  EF  A+D+L+ S +Q  + + D   QILFNR + QLGL AF++ +  E H  L++L +   ++E+L Q   Q               +  +P+H HINL+L++ V + C++L
Sbjct:  480 VISTLTDALSKQQNQSLRKRAVLYNVYYTALNKEFQVAKDMLIESKVQSFINKSDPSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLASSHLREILGQQTLQRVTAHSNSSNADEREKLCLPFHEHINLDLIDVVFMTCSLL 624          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CANGA (Eukaryotic translation initiation factor 3 subunit C OS=Candida glabrata GN=NIP1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.073e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -1
Query:    1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 378
            RA L  IY+ AL  EF  A++LLL + +Q N+ + D   QILFNR + QLGL AF++    E H  L+EL +   ++E+L Q   Q      +      +R +Q +PYH HINL+L++ V +  ++L
Sbjct:  498 RATLSHIYYTALNGEFEVAKELLLKTKVQSNINKSDPSLQILFNRVVVQLGLSAFKLCKIEECHQILNELLASSHLREILGQQSLQRIASNSSSSSSSEDREKQCLPYHQHINLDLVDLVFMTSSLL 624          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASHGO (Eukaryotic translation initiation factor 3 subunit C OS=Ashbya gossypii GN=NIP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 46/137 (33.58%), Postives = 82/137 (59.85%), Query Frame = -1
Query:    1 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQ------SRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 393
            E  K RA L  IY++AL ++FS A+++L+ S++++++   D   QILFNR + QLGL AF++ +  + H  L+E+ +   +++++ Q   Q      S     TP +        +P+H HINL+L++AV + C++L
Sbjct:  495 EMLKRRATLYQIYYYALNNQFSKAKEMLVQSNVRNSINSQDPTIQILFNRVVVQLGLAAFKLCLVEDCHQILNEVSTASHLRDIMGQQSLQRVSNNISSNGTVTPTEMLC-----LPFHQHINLDLIDAVFMTCSLL 626          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_KLULA (Eukaryotic translation initiation factor 3 subunit C OS=Kluyveromyces lactis GN=NIP1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = -1
Query:    1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 378
            +  L   Y+ AL  E++ A+ ++L S +   +   D   QIL+NR + QLGL AF+ G+  E H  L+ L     ++E+L Q   Q         Q     +  +P+H HINL+L++ V++ C++L
Sbjct:  514 KGTLYKTYYIALNQEYAPAKKIMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLREILGQQSLQRANANSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLL 639          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_CANAL9.376e-2237.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_PICST1.497e-1934.93Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_LODEL5.688e-1939.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_VANPO8.214e-1831.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_CANGA1.073e-1738.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ASHGO1.186e-1633.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_KLULA2.734e-1331.75Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
back to top