CX046616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CANAL (Eukaryotic translation initiation factor 3 subunit C OS=Candida albicans GN=NIP1 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22 Identity = 55/147 (37.41%), Postives = 86/147 (58.50%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKAR-AMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQER-LERRRQMPYHMHINLELLEAVHLNCAIL 435 ++D L + K +T + A+L IY++A+ ++ A++L L S N+ + Q+ +NRA+ QLGL AFR G E H L+E+ + + KELL QG ++ K P Q LER++ +P+H HINLELLE V + C++L Sbjct: 476 VIDQLTEFLQKQQKNKTYGKHAILFSIYYYAVNSQYEKAKELFLRSQFYSNINSAESSLQVQYNRALVQLGLSAFRAGSIEESHKILNEIVNSQRSKELLGQG-----FNSKFPNQATVLERQKLLPFHQHINLELLECVFMTCSLL 617
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PICST (Eukaryotic translation initiation factor 3 subunit C OS=Pichia stipitis GN=NIP1 PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.497e-19 Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQ-ERLERRRQMPYHMHINLELLEAVHLNCAIL 435 +++ L S + K+ + A+L +Y++A+ + ++ A++L L S + + + D Q+ +NRA+ QLGL AFR G E H L+E+ + + KELL QG ++ K P Q +E+ + +P+H HINLELLE V+ C++L Sbjct: 464 LIEGLSSFLTKHKNPVYAKHALLFSVYYYAVNNNYNRAKELFLDSQIFNKIHHADSSLQVQYNRAIVQLGLSAFRNGAVEESHKVLNEIVNSQRSKELLGQG-----FNSKYPNQATTVEKAKLLPFHQHINLELLECVYSTCSLL 604
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_LODEL (Eukaryotic translation initiation factor 3 subunit C OS=Lodderomyces elongisporus GN=NIP1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = -1 Query: 1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQER-LERRRQMPYHMHINLELLEAVHLNCAIL 378 +A+L IY++A+ +++ A++L L +H + D Q+ +NRA+ QLGL AFR G E H L+E+ + + KELL QG ++ K P Q +E++R +P+H HINLELLE V++ C++L Sbjct: 458 QALLYSIYYYAVNGDYNKAKELFLSAHFNLS----DSALQVSYNRALVQLGLSAFRSGAIEESHKILNEMVNSQRSKELLGQG-----FNSKFPNQATVVEKQRLLPFHQHINLELLECVYMTCSLL 575
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_VANPO (Eukaryotic translation initiation factor 3 subunit C OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NIP1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18 Identity = 46/145 (31.72%), Postives = 81/145 (55.86%), Query Frame = -1 Query: 1 MMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 435 ++ L + K ++ + RA+L ++Y+ AL EF A+D+L+ S +Q + + D QILFNR + QLGL AF++ + E H L++L + ++E+L Q Q + +P+H HINL+L++ V + C++L Sbjct: 480 VISTLTDALSKQQNQSLRKRAVLYNVYYTALNKEFQVAKDMLIESKVQSFINKSDPSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLASSHLREILGQQTLQRVTAHSNSSNADEREKLCLPFHEHINLDLIDVVFMTCSLL 624
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_CANGA (Eukaryotic translation initiation factor 3 subunit C OS=Candida glabrata GN=NIP1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.073e-17 Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -1 Query: 1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQ-MPYHMHINLELLEAVHLNCAIL 378 RA L IY+ AL EF A++LLL + +Q N+ + D QILFNR + QLGL AF++ E H L+EL + ++E+L Q Q + +R +Q +PYH HINL+L++ V + ++L Sbjct: 498 RATLSHIYYTALNGEFEVAKELLLKTKVQSNINKSDPSLQILFNRVVVQLGLSAFKLCKIEECHQILNELLASSHLREILGQQSLQRIASNSSSSSSSEDREKQCLPYHQHINLDLVDLVFMTSSLL 624
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ASHGO (Eukaryotic translation initiation factor 3 subunit C OS=Ashbya gossypii GN=NIP1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16 Identity = 46/137 (33.58%), Postives = 82/137 (59.85%), Query Frame = -1 Query: 1 ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQ------SRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 393 E K RA L IY++AL ++FS A+++L+ S++++++ D QILFNR + QLGL AF++ + + H L+E+ + +++++ Q Q S TP + +P+H HINL+L++AV + C++L Sbjct: 495 EMLKRRATLYQIYYYALNNQFSKAKEMLVQSNVRNSINSQDPTIQILFNRVVVQLGLAAFKLCLVEDCHQILNEVSTASHLRDIMGQQSLQRVSNNISSNGTVTPTEMLC-----LPFHQHINLDLIDAVFMTCSLL 626
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_KLULA (Eukaryotic translation initiation factor 3 subunit C OS=Kluyveromyces lactis GN=NIP1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13 Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = -1 Query: 1 RAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 378 + L Y+ AL E++ A+ ++L S + + D QIL+NR + QLGL AF+ G+ E H L+ L ++E+L Q Q Q + +P+H HINL+L++ V++ C++L Sbjct: 514 KGTLYKTYYIALNQEYAPAKKIMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLREILGQQSLQRANANSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLL 639 The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bpback to top |