CX046612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.789e-20 Identity = 58/129 (44.96%), Postives = 75/129 (58.14%), Query Frame = -2 Query: 259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 609 MV AVAV+ + G GT F+ G PTTV G++SGL PG H +H G+ +N +STGP + PAG + G L NITV +G A+F I K IPL+G S+IGR +VVH+ P D G G Sbjct: 1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 3.643e-20 Identity = 61/150 (40.67%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609 M V V+ + G KGT+ F+ EG+G TTV G++SGL PG H +H G+ +N +STGP F P G G L NITV +G ATF I + IPL G NS++GR +VVH+ P + + G VA G IGL Sbjct: 1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20 Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = -2 Query: 259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 609 ++ AV V+ G KG V F+ EG GPTTV G +SGL PG H +H G+ +N +STGP F P G + G L N+TV ++G F I + IPLSG +S++GR +VVH+ P D G G Sbjct: 3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPD-DLGKG 130
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20 Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609 M VAV+ + G GT+ F+ EG G TTV G++SGL PG H +H G+ +N +STGP F P G G L NITV +G ATF I IPL+G NS++GR +VVH+ P + + G VA G IGL Sbjct: 1 MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20 Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609 M VAV+ + G KGT+ F+ EG G TTV G++SGL PG H +H G+ +N +STGP F P G G L NI V +G ATF I IPLSG NS++GR +VVH+ P + + G VA G IGL Sbjct: 1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGL 150
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.028e-19 Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = -2 Query: 259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 609 MV AVAV+ + G GT+ F+ EG+GPTTV GSL+GL PG H +H G+ +N +STG F P + G L N+ V +G +F I + IPL+G NS+IGR +VVH+ S D G G Sbjct: 1 MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHAD-SDDLGKG 128
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18 Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = -2 Query: 232 PLLSVPLSKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 660 PL + P VV + AVAV+ GT+ +G V+ S E GPTTV ++GL PG+H +H +G+ +N +STG F P G G L NI +EG+A I T IPLSG N+VIGR LVVH S + + G +A G +GL+ Sbjct: 46 PLATAPKPLSVV---AVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 210
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17 Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = -2 Query: 232 LLSVPLSKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 657 L SV K ++ +T AVAV+ GT+ +G V+ + + GPTTVK ++GL PG H +H +G+ +N +STGP F P G G L NI + G+A + IPLSG NSV+GR LVVH S + + G +A G +GL+ Sbjct: 52 LSSVTSPKPFIVFAATK-KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 217
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17 Identity = 61/161 (37.89%), Postives = 84/161 (52.17%), Query Frame = -2 Query: 232 SKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 639 SK + I +T AVAV+ GT+ +G V+ + E GPTTV +SGL PG H +H +G+ +N +STGP F P GA G L NI ++G+A I IPL+G NSV+GR LVVH S + + G +A G +GL+ Sbjct: 61 SKPLTIVAATK-KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLT 220
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17 Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = -2 Query: 232 SKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 639 ++ +V++ +T AVAV+ GT+ +G V+ + + GPTTV ++GL PG H +H +G+ +N ISTGP F P G L NI +EG+A I K IPLSG NSV+GR VVH S + + G +A G +GL+ Sbjct: 50 ARALVVADATK-KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 209 The following BLAST results are available for this feature:
BLAST of CX046612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046612 ID=CX046612; Name=CX046612; organism=Citrus sinensis; type=EST; length=856bpback to top |