CX046612

Overview
NameCX046612
Unique NameCX046612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.789e-20
Identity = 58/129 (44.96%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 609
            MV AVAV+  + G  GT  F+  G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  K IPL+G  S+IGR +VVH+ P  D G G
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.643e-20
Identity = 61/150 (40.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609
            M   V V+  + G KGT+ F+ EG+G TTV G++SGL PG H   +H  G+ +N  +STGP F P G             G L NITV  +G ATF I  + IPL G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = -2
Query:  259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 609
            ++ AV V+ G    KG V F+ EG GPTTV G +SGL PG H   +H  G+ +N  +STGP F P G +           G L N+TV ++G   F I  + IPLSG +S++GR +VVH+ P  D G G
Sbjct:    3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPD-DLGKG 130          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = -2
Query:  235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609
            M   VAV+  + G  GT+ F+ EG G TTV G++SGL PG H   +H  G+ +N  +STGP F P G             G L NITV  +G ATF I    IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = -2
Query:  235 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 609
            M   VAV+  + G KGT+ F+ EG G TTV G++SGL PG H   +H  G+ +N  +STGP F P G             G L NI V  +G ATF I    IPLSG NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGL 150          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.028e-19
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  259 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 609
            MV AVAV+  + G  GT+ F+ EG+GPTTV GSL+GL PG H   +H  G+ +N  +STG  F P   +           G L N+ V  +G  +F I  + IPL+G NS+IGR +VVH+  S D G G
Sbjct:    1 MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHAD-SDDLGKG 128          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18
Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = -2
Query:  232 PLLSVPLSKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 660
            PL + P    VV   +    AVAV+ GT+  +G V+ S E  GPTTV   ++GL PG+H   +H +G+ +N  +STG  F P G             G L NI   +EG+A   I  T IPLSG N+VIGR LVVH             S  + + G  +A G +GL+
Sbjct:   46 PLATAPKPLSVV---AVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 210          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  232 LLSVPLSKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 657
            L SV   K  ++  +T   AVAV+ GT+  +G V+ + +  GPTTVK  ++GL PG H   +H +G+ +N  +STGP F P G             G L NI   + G+A   +    IPLSG NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   52 LSSVTSPKPFIVFAATK-KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 217          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 61/161 (37.89%), Postives = 84/161 (52.17%), Query Frame = -2
Query:  232 SKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 639
            SK + I  +T   AVAV+ GT+  +G V+ + E  GPTTV   +SGL PG H   +H +G+ +N  +STGP F P     GA        G L NI   ++G+A   I    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   61 SKPLTIVAATK-KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLT 220          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = -2
Query:  232 SKGVVISHSTMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 639
            ++ +V++ +T   AVAV+ GT+  +G V+ + +  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   +EG+A   I  K IPLSG NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   50 ARALVVADATK-KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 209          
The following BLAST results are available for this feature:
BLAST of CX046612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SODC1_SOLLC2.789e-2044.96Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC1_BRAJU3.643e-2040.67Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_PINSY4.758e-2042.64Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_ARATH4.758e-2040.67Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC2_BRAJU4.758e-2041.33Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_SOYBN4.028e-1943.41Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODCP_VITVI4.453e-1837.50Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_PETHY6.430e-1735.93Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_SPIOL8.398e-1737.89Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_ORYSJ8.398e-1736.02Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B03-D5-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046612 ID=CX046612; Name=CX046612; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTTAGTCTTAAGGACAGTGCACAGCACGCCTGGACTTTTATTTAT
TTTATTTACGGCCACATTCTACAAGGTACAACATATTACAGACATGCCCT
GGCTTTTATTTATTTTATTATAGCCAGATTTTGATTCGTACAACATATTA
TTTATTTTATTAAGTATTCAAGACACATTCGACATCATGTCAAATGTATT
TATTATGGTATGGAGAGAAGCCCCTTCAATAACTGAGACCGATGGTGCCC
CAAGCTACTCCATCACCAGGATCTGGACTGGGACTTGAGTGGACTACAAG
ACCCCTTCCAATAACGGAATTTGTTCCAGAAAGAGGAATCGTCTTGTAAA
TTTCAAAAGTAGCAATACCCTCACTAGTAACAGTGATGTTTTCTAAAAAA
CCGTCAGCTCCAGCAGGTTTAAAAGGGGGTCCAGTTGATATCCAATCATT
GCTTATGTTTCCGTAAGTGTGAATAATGAGTGCGTGATCACCAGGCGGCA
AACCAGAGAGGCTTCCTTTCACAGTTGTTGGACCACTTCCTTCAACGCTA
AAGGAAACAGTTCCCTTGCGACCGTTAGTTCCAGTAATAACTGCAACTGC
ATTCACCATTGTGCTGTGTGATATCACAACGCCCTTAGAGAGAGGAACAG
AGAGTAACGGTGCGAAGAAGATTATGTCACCGTGCGATGTCGAGGCTCTG
AAGAAATGCTTGGAAGAAAACAAAGGAGACTACGTGAAATGCCAATCACA
GATTGAGGCTTTCAAGTCTTCTTGTTCTTTGAAAAAACCTAGCTCTTCTT
TGGAATCTAAACAGCAGTTCAATTCTGGTGTGTGAATCTGATCTATGGAA
AATTTT
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