CX046612

Overview
NameCX046612
Unique NameCX046612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = -2
Query:  259 KGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 567
            KG + F  +G+GP T+ GS++GL  G H   +H +G+ +N   S G  F P G +           G L N+    EG+A   I  + I L+G+ S+IGR +VVH     D G G
Sbjct:   29 KGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEK-EDDLGKG 142          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = -2
Query:  232 VNAVAVITGTNGRKGTVSFSV-EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            + AV V+ G    +GT++F   E +GP  V GS++GL  G H   +H +G+ +    S GP F P               G L N+T   +G+A   I    I LSG +S+IGR LVVH             S  + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIA 153          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -2
Query:  256 AVAVITGTNGRKGTVSFSVEG-SGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 600
            AVAV+ G +   GT+  +    S P  ++G + GL PG H   +H YG+ +N  +S GP F P G             G L N+   ++G+A   I  K I L G N+VIGR +VVH+    D G GV
Sbjct:   27 AVAVLRG-DVVSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAG-QDDLGQGV 152          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = -2
Query:  259 MVNAVAVITGTNGRKGTVSFSVEGS-GPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 609
            +V AV VI G    KGTV F  + +  P  V G ++GL  G H   +H +G+ +N   S GP F P G             G L NI  + +G    EI  K I L G NS++GR +VVH+ P  D G G
Sbjct:    2 VVKAVCVINGDV--KGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPD-DLGKG 128          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 45/126 (35.71%), Postives = 60/126 (47.62%), Query Frame = -2
Query:  259 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 600
            AV V+ G    +GT+ F  +G     V GS++GL  GDH   +H +G+ +    S GP F P               G L N+T    G+A  +I    I LSG  S+IGR +VVH  P  D G G
Sbjct:    5 AVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPD-DLGRG 128          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  232 VNAVAVITGTNGRKGTVSFSV-EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA--TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            + AV V+ G +  +GT++F   E +GP  V GS++GL  G H   +H +G+ +    S GP F P               G L N+T   +G+A  +FE    I LSG +S+IGR LVVH             S  + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFE-DSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIA 153          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  232 VNAVAVITGTNGRKGTVSFSV-EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA--TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            + AV V+ G +  +GT++F   E +GP  V GS++GL  G H   +H +G+ +    S GP F P               G L N+T   +G+A  +FE    I LSG +S+IGR LVVH             S  + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFE-DSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIA 153          
BLAST of CX046612 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  232 VNAVAVITGTNGRKGTVSFSV-EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA--TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 606
            + AV V+ G +  +GT++F   E +GP  V GS++GL  G H   +H +G+ +    S GP F P               G L N+T   +G+A  +FE    I LSG +S+IGR LVVH             S  + + G  +A G IG++
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFE-DSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGIA 153          
The following BLAST results are available for this feature:
BLAST of CX046612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SODC_CARCR5.273e-1135.65Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC_CALJA5.273e-1132.45Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_CAEBR5.273e-1136.72Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_CERCA6.886e-1137.69Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_BOVIN6.886e-1135.71Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_MACMU8.994e-1132.89Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU8.994e-1132.89Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA8.994e-1132.89Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B03-D5-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046612 ID=CX046612; Name=CX046612; organism=Citrus sinensis; type=EST; length=856bp
TTTTTTTTAGTCTTAAGGACAGTGCACAGCACGCCTGGACTTTTATTTAT
TTTATTTACGGCCACATTCTACAAGGTACAACATATTACAGACATGCCCT
GGCTTTTATTTATTTTATTATAGCCAGATTTTGATTCGTACAACATATTA
TTTATTTTATTAAGTATTCAAGACACATTCGACATCATGTCAAATGTATT
TATTATGGTATGGAGAGAAGCCCCTTCAATAACTGAGACCGATGGTGCCC
CAAGCTACTCCATCACCAGGATCTGGACTGGGACTTGAGTGGACTACAAG
ACCCCTTCCAATAACGGAATTTGTTCCAGAAAGAGGAATCGTCTTGTAAA
TTTCAAAAGTAGCAATACCCTCACTAGTAACAGTGATGTTTTCTAAAAAA
CCGTCAGCTCCAGCAGGTTTAAAAGGGGGTCCAGTTGATATCCAATCATT
GCTTATGTTTCCGTAAGTGTGAATAATGAGTGCGTGATCACCAGGCGGCA
AACCAGAGAGGCTTCCTTTCACAGTTGTTGGACCACTTCCTTCAACGCTA
AAGGAAACAGTTCCCTTGCGACCGTTAGTTCCAGTAATAACTGCAACTGC
ATTCACCATTGTGCTGTGTGATATCACAACGCCCTTAGAGAGAGGAACAG
AGAGTAACGGTGCGAAGAAGATTATGTCACCGTGCGATGTCGAGGCTCTG
AAGAAATGCTTGGAAGAAAACAAAGGAGACTACGTGAAATGCCAATCACA
GATTGAGGCTTTCAAGTCTTCTTGTTCTTTGAAAAAACCTAGCTCTTCTT
TGGAATCTAAACAGCAGTTCAATTCTGGTGTGTGAATCTGATCTATGGAA
AATTTT
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