DN618323

Overview
NameDN618323
Unique NameDN618323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.157e-60
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.221e-59
Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    3 KPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.594e-59
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+   RKL+SHRR  +W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.007e-58
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+ A RKL +HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    5 KPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145
[Close]
BLAST of DN618323 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.129e-58
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = -3 
Query:  181 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 600
            K RG+ A RKL+++RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    5 KPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of DN618323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_RAT4.196e-6079.4340S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_MOUSE4.196e-6079.4340S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_HUMAN4.196e-6079.4340S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA4.196e-6079.4340S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN4.196e-6079.4340S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_ICTPU7.157e-6078.7240S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_CAEEL1.221e-5975.8940S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_PIG1.594e-5978.7240S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_ASPFU3.007e-5878.0140S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR5.129e-5877.3040S ribosomal protein S23 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618323 ID=DN618323; Name=DN618323; organism=Citrus sinensis; type=EST; length=683bp
CCCCCTTTTCAGGTAGAAGAGACAGATACTAATTTACTAATAGTCTCAAC
AGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACATGATAAAGGA
AAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAAAAAAAGAAAA
CATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGTTTCTCCTTCT
TCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTTGACAACCTTA
AATCTAACACCAGGAATATCTCCCACAGCATGCCCCTTTCGACCAAATCC
TGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACAACCATCGT
TTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCTGAACTCGA
GCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATACCGATTTT
CTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGGCTTCTTCC
ATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCCACCTTTGT
CTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCACGTGTCTT
CCTCAGAGATCTTGGTGGATAAGAATCATCAGATGGATTTAAAGCAAACC
CATCAAGAGTAGCAAATATAAATTCTCACATCA
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