CX046593

Overview
NameCX046593
Unique NameCX046593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            EL    G +G+V GQV D+ +E R+ + +E LE IHE KTA LL              + ++E LRTF+  IG+ FQ+ DDILDL  S +++GK  G D   DK TYP LL +E +K   D   K+A++ +     +K   L  L + IA R +
Sbjct:  145 ELISAAGTEGMVGGQVADMEAENRQ-VTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVHIKEAKRLIGGLSLQKDL-LYELCDLIAARDH 296          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  147 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNE-VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEK--AAPLIALANYIAYR 602
            ELA   G  G+  GQ +D+++EG K + ++ LE IH HKT AL+                  +  L  +A  IGL FQV DDILD+   +  LGK  G D    K TYP LLG+E+++K A  L  DA+Q L +  ++    + L ALA+YI  R
Sbjct:  144 ELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = -3
Query:  141 LAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALL-EXXXXXXXXXXXGTDNEVEK-LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 599
            LA+  G  G+  GQ +D+ SE  K + +  LE IH +KT ALL              TD  +E+ L  +A  IGL FQV DDILD+   S E+GK  G DL  DK TYPKLLG+  +K+ A  L + A  +L +   +    + ALA +I  R++
Sbjct:  144 LAQGAGVQGMCLGQSLDLISE-HKQISLSELELIHRNKTGALLIAALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDLYQSALSELEKIPFD--TTVRALAEFIITRKS 295          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  147 GADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLA-DKLNK--DAQQQLSEFDQEKAAPLIALANYIAYR 584
            G++G+V GQ++D+  E  K L +  LE IH HKT  L+              D ++E+L    + +GL+FQ+ DDILD+  S + +GKT G DL  DK TY  LLG+E SK+L  DKL +  DA + L   +      L  L  YI  R
Sbjct:  146 GSNGMVYGQMLDMQGE-HKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKLTETYDALKTLQPINDN----LKTLITYIVER 289          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.516e-17
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  141 LAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 599
            LAK  G +G+VAGQ  D+  EG K L +  LE+IH HKT  +L+               +  +L  FA  +GL FQ+ DDILD+  + +++GK  G D   +K TYP LL +  +K+      + AQ+ L   D + AA L  +   +A R +
Sbjct:  147 LAKAAGPEGMVAGQAADMEGEG-KTLTLSELEYIHRHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGAKEKLAFHIEAAQRHLRNADVDGAA-LAYICELVAARDH 297          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 49/158 (31.01%), Postives = 82/158 (51.90%), Query Frame = -3
Query:  147 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRT----FARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD--QEKAAPLIALANYIAYR 602
            ELA+ + A+G   GQ +D++  G K + ++ +  +H  K+ AL+            G +     L      ++ C GL  QV+DDILD+T  +  LGKT GKD  A K T   ++G++E+++ A  L +DA + ++      E+ A LI  AN   ++
Sbjct:  171 ELAQAVSAEGAAGGQAIDLSLVG-KHVELDRIVAMHRMKSGALVRASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDAAAQKPTCASIMGLQEARQFALDLLRDAGEAIAPLGPRAERLAQLIQRANAYLFK 327          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAI (Geranyltranstransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  180 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEK-LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAP 602
            EL+  IG+ G+  GQ +D+ +E +KD+ +  LE I+ +KT+ L+                 +   L  F+  IGL FQ+ DDILD  K S    KT  K ++  K TYP ++G++ES+K   +L+K +   L+   ++ + P
Sbjct:  144 ELSYSIGSSGMCMGQNLDLEAE-KKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDFKKDSV---KTDNKKII-KKHTYPLIIGLDESRKKIKQLHKKSFLALNSLKKKISIP 280          
The following BLAST results are available for this feature:
BLAST of CX046593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ISPA_BACSU2.559e-2038.96Geranyltranstransferase OS=Bacillus subtilis GN=is... [more]
ISPA_ECOLI1.834e-1838.71Geranyltranstransferase OS=Escherichia coli (strai... [more]
ISPA_HAEIN3.128e-1839.35Geranyltranstransferase OS=Haemophilus influenzae ... [more]
ISPA_MICLU6.968e-1838.93Geranyltranstransferase OS=Micrococcus luteus GN=f... [more]
ISPA_BACST4.516e-1735.29Geranyltranstransferase OS=Bacillus stearothermoph... [more]
ISPA_BRAJA1.776e-1331.01Probable geranyltranstransferase OS=Bradyrhizobium... [more]
ISPA_BUCAI6.317e-1132.39Geranyltranstransferase OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9A05-B9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046593 ID=CX046593; Name=CX046593; organism=Citrus sinensis; type=EST; length=604bp
CATCGCTGAATAAGAAGAATGTTTATAAAATATTAAAAAAGCTCACCAGT
TACTCTCAAGATGAGGTAAGCTTAAATATACAATTACAAATCAAACGACA
CCCAATTCCCCTGGAGGCATTAACCCAATTAAAAACATCAATTCTGCCTA
TAAGCAATATAGTTAGCCAAAGCAATCAAAGGCGCGGCCTTTTCCTGATC
AAATTCCGACAATTGCTGTTGAGCATCTTTATTCAACTTGTCAGCTAACT
TCTTCGATTCTTCGATCCCCAGCAACTTGGGATACGTTAACTTATCGGCC
ACCAAATCTTTGCCGGCAGTCTTCCCCAATTCTTTTGACGACTTGGTCAG
ATCGAGGATATCATCAACTACTTGAAACAAAAGCCCAATACAGCGAGCAA
AAGTTCTCAGTTTCTCGACTTCGTTGTCAGTTCCGCCGCCCAATATGGCT
CCAATAACAACAGCAGCCTCCAATAAAGCTGCAGTTTTGTGTTCATGTAT
AAATTCAAGATGCTCAATTCCCAAATCTTTTCGGCCTTCAGAATTGATAT
CAACAACTTGGCCGGCGACAAGCCCATCAGCTCCGATATATTTAGCCAAT
TCCG
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