DN618297

Overview
NameDN618297
Unique NameDN618297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 32/95 (33.68%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  214 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 498
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI P+  EL+ KH  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAQEFDVQAMPTFVYMKGEEKLDKVVGA 105          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = -1
Query:  178 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 501
            N+    S E + S L +  D        FTA WCGPC+ I PV  ELS K P +   K+D+D+  L     + ++ A+PTF+F + G+ V ++VGA    L+  +  L
Sbjct:    5 NVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDE--LRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAAL 110          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    D  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   S+  +  +PTF FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKAAFQEALDDAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    D  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   S+  +  +PTF FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD--CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  196 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLK 501
            N+ +I + E ++  L +   D    +  F+A WCGPCK + P   ELS KH  +    +D+D+  L    S  +I A PTF F ++G+++ ++VGA+   L+
Sbjct:   24 NVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDE--LSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQ 123          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = -1
Query:  181 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQ 498
            ++   + E++   L    +     +  FTA WC PC+FI PV  +L+ KH  V  +K+D+D+  L +   +  + A+PTF+F + GE    +VGA    +   +E+
Sbjct:    7 VIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDE--LNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEK 110          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = -1
Query:  214 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 510
            G   ++   + E +N  +    +     +  FTA+WC PC+FI PV  E++ K  +V  +KID+D+  L++   +  + A+PTF+F + G  +  +VGA
Sbjct:    3 GEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDE--LQAVAQEFKVEAMPTFVFMKEGNIIDRVVGA 99          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    +  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   S+  +  +PTF FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKYAFQEALNSAGEKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  178 KVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 453
            KV D + P +  F A WCGPCK I P + +LS  H  +  YK+D+D+  L    +   +SA+PTF F++ GE+  E+ GA+ + ++  ++ +
Sbjct:   15 KVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDE--LSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVKAI 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 32/110 (29.09%), Postives = 60/110 (54.55%), Query Frame = -1
Query:  178 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 507
            PS +L   S   +     ++K+ +   +  F+A+WCGPC+ I P I  ++ K   V   K+D+D+  L     + N++A+PTF+  + G+++  I+GA    L+  + +L
Sbjct:   24 PSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDE--LPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKL 131          
The following BLAST results are available for this feature:
BLAST of DN618297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TRXH1_BRANA6.191e-1333.68Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_PICMA8.086e-1335.19Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
THIO_MACMU2.353e-1235.58Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_HUMAN3.073e-1235.58Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
TRXH9_ARATH4.013e-1233.33Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH4.013e-1230.19Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH5_ARATH5.241e-1231.31Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
THIO_PIG5.241e-1234.62Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_PENCH5.241e-1235.87Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXH2_ARATH6.845e-1229.09Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618297 ID=DN618297; Name=DN618297; organism=Citrus sinensis; type=EST; length=513bp
AAGGGCTTTTCAATAATATTACAAAAACAACGTCAACTATGAAAAATGCA
GGCTGGACAGGGTTCGTCTTGAAGAGCTAATGTTTGTTGTAAGGCCAGCA
AGGAGCCCAACAGCCCCAATCTTTCTTCAGCAAGCTCATCTGATCAGGTA
TCCTTACTTCATTCAATCCTTCTTGTAAAGTTGTTCCATAGTTGTCTTCA
ACCGTGAGACATCAGCACCAACTATTTCAGCCACCTTTTCTCCATGTTGA
AAGAACAAGAATGTTGGCACAGCACTGATGTTTAACTTGCTTAATGTGCT
TTCAAGTCCTTTCTGGTCAATGTCAATCTTATATGTTGTTACATGAGGGT
GTTTTGCACTCAACTCCCCTATGACAGGCCATATAAACTTGCAGGGGCCA
CACCAAGCAGCAGTGAAATAAAATATCGCTGGCAGAGAATCATCTTTAAC
TTTGCCAAGTGAGCTATTGAACTCTTCCCCTGACTCGATGACTAGAATAT
TTGATGGACCATC
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