DN618297

Overview
NameDN618297
Unique NameDN618297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F   L    D  +  +  F+A WCGPCK I P    LS K  +V   ++D+D    +   ++  +  +PTF FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKSAFQEVLDSAGDKLV--VVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDD--CKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTF-LFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    D  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   S+  +  +PTF  FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD--CQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINEL 105          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  184 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTME 489
            +    EF S    V  D L  + +F A WCGPCK I P   + S  +   T  K+D+DQ  L    ++  + A+P+F  +++GEK+ EIVGA+ ++L+ +++
Sbjct:    5 VSDSSEFKSI---VCQDKLVVVDFF-ATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQ--LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 30/78 (38.46%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  178 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 411
            A WCGPCK I P + + +  +   + Y+ID+D+  L    ++L I A+PTFL F+ G+KV+++VGA+   L+  ++ L
Sbjct:   33 ATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDE--LSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKAL 108          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  178 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 498
            + VI+  EEF   L K   + L A+  F+AAWCGPC+ + P+   LS KH  V    +++D +  E  +    I  +PTF F+++ EKV E  GA V +L+ ++ +L
Sbjct:  412 VRVIKDKEEFEEVL-KDAGEKLVAVD-FSAAWCGPCRMMKPLFHSLSLKHEDVIF--LEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISEL 514          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  178 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 498
            + VI S E+F +SL K   + L A+  F+A WCGPC+ I P    LS KH  V   ++D D    E  + +  I  VPTF F++  EKV E+ GA   +L+  + +L
Sbjct:  450 VKVILSKEDFEASL-KEAGERLVAVD-FSATWCGPCRTIRPFFHALSVKHEDVVFLEVDAD--NCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAEL 552          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  181 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQ 498
            + +IES E F  +L    D  +  +  F+A WCGPCK I P    L  K+ +V   ++D+D    +   +   +  +PTF F++ G+KV E  GA+  +L+ ++ +
Sbjct:    2 VKLIESKEAFQEALAAAGDKLV--VVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD--CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITE 103          
The following BLAST results are available for this feature:
BLAST of DN618297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
THIO_RABIT4.437e-1134.62Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_PONAB4.437e-1135.24Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRX1_SCHPO7.568e-1134.31Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_EMENI7.568e-1138.46Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TXND2_MOUSE9.885e-1136.45Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TXND2_HUMAN9.885e-1138.32Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIO_MOUSE9.885e-1131.13Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618297 ID=DN618297; Name=DN618297; organism=Citrus sinensis; type=EST; length=513bp
AAGGGCTTTTCAATAATATTACAAAAACAACGTCAACTATGAAAAATGCA
GGCTGGACAGGGTTCGTCTTGAAGAGCTAATGTTTGTTGTAAGGCCAGCA
AGGAGCCCAACAGCCCCAATCTTTCTTCAGCAAGCTCATCTGATCAGGTA
TCCTTACTTCATTCAATCCTTCTTGTAAAGTTGTTCCATAGTTGTCTTCA
ACCGTGAGACATCAGCACCAACTATTTCAGCCACCTTTTCTCCATGTTGA
AAGAACAAGAATGTTGGCACAGCACTGATGTTTAACTTGCTTAATGTGCT
TTCAAGTCCTTTCTGGTCAATGTCAATCTTATATGTTGTTACATGAGGGT
GTTTTGCACTCAACTCCCCTATGACAGGCCATATAAACTTGCAGGGGCCA
CACCAAGCAGCAGTGAAATAAAATATCGCTGGCAGAGAATCATCTTTAAC
TTTGCCAAGTGAGCTATTGAACTCTTCCCCTGACTCGATGACTAGAATAT
TTGATGGACCATC
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