CX046522

Overview
NameCX046522
Unique NameCX046522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.105e-32
Identity = 78/188 (41.49%), Postives = 105/188 (55.85%), Query Frame = -2
Query:  227 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 787
            Y+ + E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   LR LNSYW+ ED + K+FE IL+DP H AI+ND  +NW+C+  HK+R  RG TSAG++ RGL+ +G      RPS  A
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNA 190          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.884e-32
Identity = 77/184 (41.85%), Postives = 101/184 (54.89%), Query Frame = -2
Query:  236 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 787
            Y+ + E W++     +  LQ  R  E+R   +IVR+ RPTR DKAR LGYKAKQ                         K   QGV +L  + S + +AEERA RK   LR L SYW+ ED + K+ E+IL+DP H AI ND  +NW+C+  HK R  RGLT+AG+  RGL+ +G      RPS
Sbjct:    6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHTRPS 187          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.884e-32
Identity = 81/184 (44.02%), Postives = 101/184 (54.89%), Query Frame = -2
Query:  236 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 787
            Y+ + E WR  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   LRVLNSYW+ ED + K+ EVILVDP H AI ND  + W+ +  HK R  RGLTSAG K RG R +G    K RPS
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.214e-32
Identity = 76/183 (41.53%), Postives = 103/183 (56.28%), Query Frame = -2
Query:  242 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 787
            Y ++ E W+      ++ L R R  ++R+ P I+R+ +PTR D+ARRLGYKAK                         G+ P   GV ++  ++S + +AEER  RK   L VLNSYW+ ED   KY+EVILVDP   +I++D +INW+C+  H  R  RGLTSAGKK RGL  KG    K R
Sbjct:    7 YKYMKEAWKNPDESYVKELMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHDNKINWICSKKHTRRAFRGLTSAGKKGRGLNKKGKGAEKVR 186          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.160e-32
Identity = 77/190 (40.53%), Postives = 107/190 (56.32%), Query Frame = -2
Query:  218 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 787
            Y+ + E W+  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   LRVLNSYW+ ED + K+FEVIL+DP H AI+ND  ++W+C+   + R  RG TSAG++ RG + +G      RPS RA  K
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRANDK 193          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.221e-31
Identity = 80/188 (42.55%), Postives = 105/188 (55.85%), Query Frame = -2
Query:  227 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 787
            Y +V + W+      ++ L   R  ++R+  SIVRV RPTR D+AR LGYKAKQ                      V G+ T   GV +    +S + +AEERA RK   + VLNSYW+ ED   K++EVIL+DP H +I ND  +NW+  P H+ R  RGLTSAG K RG+R +G    K RPS RA
Sbjct:    6 YAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRGKGTEKCRPSVRA 190          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.554e-31
Identity = 77/193 (39.90%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            M  Y  V E W+K     ++ LQ  R  ++R+ P++VRV +PTR D+AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L VLNSY + ED   K++EVIL+D  H +I+ND     LC   H +R  RGLTSAGKK RGL  KG    K RP  RA  K
Sbjct:    1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRANKK 191          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 72/188 (38.30%), Postives = 104/188 (55.32%), Query Frame = -2
Query:  227 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 787
            Y ++ + W+      +R L+  R   +R+  S+ RV RPTR D+AR LGYKAKQ                      + G+ T   G  ++   +S + ++EERA RK   + VLNSYW+ ED   K++EVILVDP+H  I++D  +NW+C   H  R  RG TSAG+K RG++ +G    K RPS R+
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKTRPSVRS 190          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.303e-30
Identity = 76/187 (40.64%), Postives = 101/187 (54.01%), Query Frame = -2
Query:  227 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 787
            Y +V E W++     ++ L   R   +R+  SIVRV  PTR D+AR LGYKAKQ                         +    G+ +L   +S + +AEERA RK   +  LNSYW+ ED   K+FEVILVD  H +I++D  + WL NPVH+ R  RG TSAG K RG+R +G    K RPS R+
Sbjct:    6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.929e-30
Identity = 75/190 (39.47%), Postives = 107/190 (56.32%), Query Frame = -2
Query:  218 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 787
            Y ++ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+                         K     V +   +++ + +AEERA RK   + VLNSYW+ ED  YK+FEVILVD  H AI++DP+++W+     + R  RGLTSAG+K RGLR KG    K RPS RA ++
Sbjct:    5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFR 190          
The following BLAST results are available for this feature:
BLAST of CX046522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_HALS31.105e-3241.4950S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALWD1.884e-3241.8550S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_HALLT1.884e-3244.0250S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_METST3.214e-3241.5350S ribosomal protein L15e OS=Methanosphaera stadt... [more]
RL15E_NATPD7.160e-3240.5350S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_METHJ1.221e-3142.5550S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_META33.554e-3139.9050S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_METBU6.062e-3138.3050S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_METMJ2.303e-3040.6450S ribosomal protein L15e OS=Methanoculleus maris... [more]
RL15E_ARCFU3.929e-3039.4750S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8E12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8E12-I24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046522 ID=CX046522; Name=CX046522; organism=Citrus sinensis; type=EST; length=863bp
TAAGGCTCTTATAATTCACGGTAGACTCAAGAAACACAAATGTCTTAATT
TAGAATGTAAGGTTTCAAAATAAGATATGTTCCATAGTATTTCAATCTCT
AAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAAAATCCCTCAAC
TGATGATAAAACATCAAAACCATAACAATGATCAACGGTAGCGACGGAGG
GAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAGGCCGAGCCTT
GTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTCTTACCTGCAG
AAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATTGCATAACCAA
TTAATTCTTGGGTCATTTCGGATGGCATTATGAGCAGGATCAACCAAGAT
CACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAGTAAGAATTGA
GAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTCTGCAACAGAC
CTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGTTTGTGGGTTT
ACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCACCACGCCTTA
CCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTAACCCAAGCGT
CGAGCCTTGTCAGGTCGAGTGGGACGGGTGACCCTAACAATAGATGGATG
TTGGCGGTACTCCCAACACCTCACCCTCTGCAAGAACCTCATCACATCTG
ACTGCTTCTTCCTCCATAGCTCCGACACGAACGTGTAAGCCCCCATTGGC
TCTGAGCTGAGCTGAGCTGAGCTGCGCAGTATCCGTGCGACTAGGGTTTT
GGGGGCCCGGTAC
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