CX046460

Overview
NameCX046460
Unique NameCX046460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.624e-41
Identity = 77/95 (81.05%), Postives = 88/95 (92.63%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQI EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.386e-39
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = -2
Query:  285 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 572
            ATYKV L+TP G + I+CPDD+++LDAAEEAGLDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQI  GFVLTC AYP  DVTIETHKEE++A
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = -2
Query:  288 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 575
            MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:    1 MASYTVKLITPDGENSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = -2
Query:  288 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 575
            MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:    1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKV L+TP G + I+CPDD+++LDAAEEAGLDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQI  GFVLTC A+P  DVTIETHKEE++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = -2
Query:  288 KANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 605
            K  RG R+ A ATYKVKL+TP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQ+  G+VLTC AYP SD+ IETHKEEEL
Sbjct:   36 KQVRGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKLITP G  E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:    1 ATYKVKLITPEGPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.867e-38
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            A+YKVKLITP G  E NCPDD +ILD AEE G DLPYSCRAGACSSC GK+V G+VDQS+ SFLDDDQIG GFVLTC AYP S+VTIETHKEE L G
Sbjct:    1 ASYKVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
The following BLAST results are available for this feature:
BLAST of CX046460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER3_RAPSA1.624e-4181.05Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_PHYES3.386e-3976.04Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_SYNY47.544e-3977.08Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY37.544e-3977.08Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_PHYAM7.544e-3975.79Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_WHEAT1.681e-3870.75Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SOLLY2.195e-3875.26Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_DATST2.195e-3875.26Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU2.195e-3875.26Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_SOLLS2.867e-3877.32Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B06-C12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046460 ID=CX046460; Name=CX046460; organism=Citrus sinensis; type=EST; length=717bp
GAAAATACCGATGACATAAAACGAAAGATCTATTGTTCTTGCTTGACTCT
TAATTATAGAACGGTACCATGTTCGGATGGGATGAGAAACCTCACCCTCT
AGGTACGATGCGCATTCATGGCCGGTGCAATTACAACAACTTCTTTGCAA
CAAGAAATAAAAACACATTACAAGAATCATTCTCAAATTACTCAATATCC
CTTTCAAAGCATTAAAATAATCAGACAAAACACAACACATAAAAGAGAAG
ATAATAATGAGATATCAAGAGCACATTATTAACCAGCGAGCTCCTCTTCC
TTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGTGAG
AACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACT
GGTCAACGGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCA
GCCCTGCATGAGTACGGAAGATCAAGCCCAGCTTCTTCAGCAGCATCAAG
AATAAACGAGTCATCAGGACAGTTGATTTCTTCCTCTCCCCCAGGTGTAA
TGAGCTTGACTTTGTATGTAGCCATGGCTACAACACGGCCACCTCTGTTG
GCTTTGAGGCCAAATATAGCCTGACCCATGTTAGGCATGGCTTTGAGGCT
GGTCGCTGTAGGCTTGCTTCTGATGAATGAGGTGCTGACCATGGCGCTTG
AGAGGGTGGCCATTGTT
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