CX046460

Overview
NameCX046460
Unique NameCX046460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.858e-37
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.858e-37
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = -2
Query:  288 MATYKVKLI-TPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 575
            MATYKV LI   G    I+CPDD++ILDAAEEAGLDLPYSCRAGACS+C GK+V+GT+DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.427e-37
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKVKL+TP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GK+ +G+VDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEEEL
Sbjct:    1 ATYKVKLVTPDGPVEFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.427e-37
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            A +KVK +TP GE  I  PDD FILDA EEAGLDLPYSCRAGACSSCTGK++ G VDQSEQSFLDDDQ+ EGFVLTC AYP  D+TIETH EE+L
Sbjct:    1 AIFKVKFLTPDGERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.169e-37
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:    1 ATYKVKLVTPDGPIEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDLTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.169e-37
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKVKLITP G    +CPD+ +ILDAAEE G DLPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:    1 ATYKVKLITPDGPVVFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEE L G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEALTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKV L+TP G + I C DD +ILDAAEE G+DLPYSCRAGACSSC GKV SG+VDQS+QSFL+D Q+ EG+VLTC AYPT DVTIETHKEEEL
Sbjct:    1 ATYKVTLVTPSGSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = -2
Query:  288 GGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 593
            G R+   ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   37 GDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
The following BLAST results are available for this feature:
BLAST of CX046460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_ATRBE1.858e-3774.23Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_APHFL1.858e-3776.29Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SOLAB2.427e-3774.74Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_GLEJA2.427e-3775.79Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER_SOLNI3.169e-3773.20Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_PHYAF3.169e-3775.79Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER_LYCCN4.139e-3774.23Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER2_SPIOL4.139e-3775.79Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER2_HYONI4.139e-3773.20Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_ORYSJ5.406e-3770.59Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_8B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B06-C12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046460 ID=CX046460; Name=CX046460; organism=Citrus sinensis; type=EST; length=717bp
GAAAATACCGATGACATAAAACGAAAGATCTATTGTTCTTGCTTGACTCT
TAATTATAGAACGGTACCATGTTCGGATGGGATGAGAAACCTCACCCTCT
AGGTACGATGCGCATTCATGGCCGGTGCAATTACAACAACTTCTTTGCAA
CAAGAAATAAAAACACATTACAAGAATCATTCTCAAATTACTCAATATCC
CTTTCAAAGCATTAAAATAATCAGACAAAACACAACACATAAAAGAGAAG
ATAATAATGAGATATCAAGAGCACATTATTAACCAGCGAGCTCCTCTTCC
TTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGTGAG
AACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACT
GGTCAACGGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCA
GCCCTGCATGAGTACGGAAGATCAAGCCCAGCTTCTTCAGCAGCATCAAG
AATAAACGAGTCATCAGGACAGTTGATTTCTTCCTCTCCCCCAGGTGTAA
TGAGCTTGACTTTGTATGTAGCCATGGCTACAACACGGCCACCTCTGTTG
GCTTTGAGGCCAAATATAGCCTGACCCATGTTAGGCATGGCTTTGAGGCT
GGTCGCTGTAGGCTTGCTTCTGATGAATGAGGTGCTGACCATGGCGCTTG
AGAGGGTGGCCATTGTT
back to top