CX046460

Overview
NameCX046460
Unique NameCX046460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = -2
Query:  288 GGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 593
            G R+   ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   37 GDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -2
Query:  288 ANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 602
            A    R+  MA YKV L TP G++ I CP D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD Q+G GFVLTC AYPTSD TI+TH+EE L
Sbjct:   22 ARPASRMSCMA-YKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 71/97 (73.20%), Postives = 81/97 (83.51%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDV IETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = -2
Query:  288 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 566
            YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QSFLDD Q+G+GFVLTC AYPTSDVTI TH+E  L
Sbjct:    1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            A+YKVKLITP G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G VDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:    1 ASYKVKLITPEGAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKVKL+TP G++E +CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+Q+ +G+VLTC A+PTSDV IETHKEEEL
Sbjct:    1 ATYKVKLVTPQGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = -2
Query:  282 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 566
            +KVKL+TP G +E  CPDD +ILD AEE G++LPYSCRAG+CSSC GK+V G +DQS+QSFLDD+QI EG+VLTCAAYP SDV IETHKEEEL G
Sbjct:    2 FKVKLLTPDGPKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = -2
Query:  288 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 575
            MATYKVKL   G ++ I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV +G+VDQS+QSFLDD QIG+GFVLTC AYPTSD TI TH+EE L
Sbjct:    1 MATYKVKLSGEGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = -2
Query:  288 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 575
            MATYKV LITP GE   + PDD +ILD+A +AG DLP SCRAGACS+C GK+VSGTVDQSEQSFLDDDQI  G+VLTC AYP SDVTIET+KEEEL
Sbjct:    1 MATYKVTLITPDGEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.577e-36
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -2
Query:  282 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 572
            A+YKVKLITP G  E +CPDD +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:    1 ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 97          
The following BLAST results are available for this feature:
BLAST of CX046460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_ORYSI5.406e-3770.59Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_CHLRE7.061e-3771.43Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_SCOJA9.222e-3773.20Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_CHLFU1.204e-3678.49Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_TOBAC2.054e-3674.74Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FERA_ALOMA2.054e-3672.63Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_LEUGL2.683e-3672.63Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_GUITH2.683e-3673.96Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER1_SYNP23.504e-3676.04Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_CAPAA4.577e-3672.16Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B06-C12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046460 ID=CX046460; Name=CX046460; organism=Citrus sinensis; type=EST; length=717bp
GAAAATACCGATGACATAAAACGAAAGATCTATTGTTCTTGCTTGACTCT
TAATTATAGAACGGTACCATGTTCGGATGGGATGAGAAACCTCACCCTCT
AGGTACGATGCGCATTCATGGCCGGTGCAATTACAACAACTTCTTTGCAA
CAAGAAATAAAAACACATTACAAGAATCATTCTCAAATTACTCAATATCC
CTTTCAAAGCATTAAAATAATCAGACAAAACACAACACATAAAAGAGAAG
ATAATAATGAGATATCAAGAGCACATTATTAACCAGCGAGCTCCTCTTCC
TTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGTGAG
AACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACT
GGTCAACGGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCA
GCCCTGCATGAGTACGGAAGATCAAGCCCAGCTTCTTCAGCAGCATCAAG
AATAAACGAGTCATCAGGACAGTTGATTTCTTCCTCTCCCCCAGGTGTAA
TGAGCTTGACTTTGTATGTAGCCATGGCTACAACACGGCCACCTCTGTTG
GCTTTGAGGCCAAATATAGCCTGACCCATGTTAGGCATGGCTTTGAGGCT
GGTCGCTGTAGGCTTGCTTCTGATGAATGAGGTGCTGACCATGGCGCTTG
AGAGGGTGGCCATTGTT
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