CX046459

Overview
NameCX046459
Unique NameCX046459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  153 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            +KV L TP G++   CP DS+ILD AEE GL+LPYSCRAG+CSSC GKV++G++DQS+Q+FLDDDQ G+G+ LTC  YPTSDVTI+TH E EL
Sbjct:    1 FKVTLDTPDGKKSFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  147 ATYKVKL-ITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 437
            A+YKV L +  G E  I+C +DSFILD AEE G+D+P+SCR+G+CS+C GK+  GTVDQSEQ+FLDDDQ+ EG+VLTC AYPTSD TI TH+EEE+ G
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEMIG 98          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 3
Query:  144 MATYKVKLI--TPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            M ++KV LI  T G    I  PDD +ILDAAEE G+DLPYSCRAGACS+C GK+ +GTVDQS+QSFLDDDQI  G+VLTC AYPTSD TI TH+EE+L
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.279e-32
Identity = 68/96 (70.83%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  147 ATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            A YKVKLI P GEE E    DD FILDAAEEAG+DLPYSCRAGACS+C G++V G VDQSE SFL+DD   +GFVLTC AYP SD  I THKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  144 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  144 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  144 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  147 ATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            A YKVKLI P G+E E + PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP SD+ I THKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.536e-31
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 3
Query:  153 YKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            YK++L+    G +  INCP D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+VDQS+QSFLD++QI  GF+LTC AYPTSD  I+TH+EE L
Sbjct:    2 YKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CX046459 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.536e-31
Identity = 67/93 (72.04%), Postives = 75/93 (80.65%), Query Frame = 3
Query:  153 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 431
            YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VDQSE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
The following BLAST results are available for this feature:
BLAST of CX046459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_PERBI1.814e-3266.67Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_BRYMA3.095e-3265.31Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER1_PLEBO4.042e-3268.37Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER2_RAPSA5.279e-3270.83Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER_THEVL1.176e-3168.04Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.176e-3168.04Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.176e-3168.04Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER1_RAPSA1.176e-3167.71Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER2_CYACA1.536e-3165.26Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_EQUTE1.536e-3172.04Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_8B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B06-C12-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046459 ID=CX046459; Name=CX046459; organism=Citrus sinensis; type=EST; length=721bp
CAACAATGGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGA
AGCAAGCCTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGC
TATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTA
CATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGT
CCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCT
TCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTG
TGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAA
ATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGT
TACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTC
TTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATT
ATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTA
ATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCA
TGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACAT
GGTACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTTT
TATGTCATCGGTATTTTCCCT
back to top