CX046408

Overview
NameCX046408
Unique NameCX046408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.621e-33
Identity = 83/232 (35.78%), Postives = 116/232 (50.00%), Query Frame = -1
Query:   91 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 768
            E F + ++ +    C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY             L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:   93 EAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.766e-33
Identity = 78/217 (35.94%), Postives = 110/217 (50.69%), Query Frame = -1
Query:   91 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 726
            C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY             L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     A +  R+G++  +C +  + PG +L C
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.161e-33
Identity = 84/239 (35.15%), Postives = 124/239 (51.88%), Query Frame = -1
Query:   91 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 789
            +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:   72 VGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLL--GQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.058e-32
Identity = 80/232 (34.48%), Postives = 117/232 (50.43%), Query Frame = -1
Query:   91 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 768
            E F + ++ +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY             L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.376e-30
Identity = 79/237 (33.33%), Postives = 117/237 (49.37%), Query Frame = -1
Query:   91 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 780
            I++ +  + +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY             L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GD+L C
Sbjct:   71 ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX046408 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  187 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 324
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX046408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI5_ORYSJ1.621e-3335.78Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE2.766e-3335.94Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA6.161e-3335.15Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_ORYSJ3.058e-3234.48Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU6.376e-3033.33Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.278e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7G08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7G08-M15-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046408 ID=CX046408; Name=CX046408; organism=Citrus sinensis; type=EST; length=831bp
CCTTTTATTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAG
ATTGTGCCATCAGATTAAGGCCATAAGGTCGTTGGTTGTAGCAATCAAGA
CTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCC
AATACGGTTACGTACAGCGGCATTCCCACCTTGGCCACATTCAATTCCAC
CGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTT
ACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGA
TGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATG
ATAGTACTGGATCAGTAGCAAGAAGGTCTGGATTGTTCAACAACTCCTCT
CCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAATTGTAATTCCAAGAGAG
TTGAATTGGACCTCGGCCATAGTACTTCCCTCGACATGGATAGTTAGGAT
CACAGTAGTCGGACGGAGGGCTAACTTCGCTTATAAAGCAATATCCCCAA
GCATATTCGCCACCAGGTGCATCGGGCCATCCCCCAGTAGTTTCATGGCC
AGTTTGGGCAAAAAAGGCAGCGATTTCTCTTTTACGCATGGTTTCATTTC
CAGAGTTACCAAAGCCTGGAAAAGCTTGGGCTGCCTCTATAAAAGCATCA
TAAGTGTAGAAGCCTCTGGCAGGGCATCGTTCATCATTTCTATACTCAAG
CAAGTCATCAAACATCTCCCTTGAGATGATCTTGCCCAGTTCACCGCCAT
GCGTCCCATGGCCGGTATCACGTCCACCGTA
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