CX046328

Overview
NameCX046328
Unique NameCX046328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_BOVIN (40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:    1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_OSTOS (40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = -3
Query:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDILTL 162
            MD  +K A V K +GRTGS+GQ TQVRV+F+DD  NR I RNVKGPVREGDILTL
Sbjct:    1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDILTL 55          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.085e-13
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -3
Query:    1 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDS    +K A V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DIL L
Sbjct:    1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVL 57          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_KLUMA (40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.085e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -3
Query:    1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FL+D  R I+RNVKGPVREGDIL L
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVL 56          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_ASHGO (40S ribosomal protein S28 OS=Ashbya gossypii GN=RPS28A PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.723e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -3
Query:    1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FLDD +R I+RNVKGPVRE DIL L
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDILVL 56          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_KLULA (40S ribosomal protein S28 OS=Kluyveromyces lactis GN=RPS28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.556e-13
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3
Query:    1 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 141
            A V+KV+GRTGSRG VTQVRV+FL+D  R I+RNVKGPVREGDIL L
Sbjct:   10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVL 56          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_NEUCR (40S ribosomal protein S28 OS=Neurospora crassa GN=rps-28 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.921e-13
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = -3
Query:    1 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDS    +K   V +V+GRTGSRG VTQVRV+F+DDQ R I+RNVKGPVRE DIL L
Sbjct:    1 MDSSKAPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILVL 57          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28B_YEAST (40S ribosomal protein S28-B OS=Saccharomyces cerevisiae GN=RPS28B PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.921e-13
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = -3
Query:    1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL L
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVL 56          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_CAEEL (40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -3
Query:    1 AVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDILTL 141
            A V KV+GRTGS+GQ TQVRV+F++DQ NR I+RNVKGPVREGDILTL
Sbjct:    7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTL 54          
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28A_YEAST (40S ribosomal protein S28-A OS=Saccharomyces cerevisiae GN=RPS28A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3
Query:    1 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 141
            A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL L
Sbjct:   10 AKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVL 56          
The following BLAST results are available for this feature:
BLAST of CX046328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_BOVIN5.486e-1474.0040S ribosomal protein S28 OS=Bos taurus GN=RPS28 P... [more]
RS28_OSTOS1.596e-1370.9140S ribosomal protein S28 OS=Ostertagia ostertagi ... [more]
RS28_SCHPO2.085e-1368.4240S ribosomal protein S28 OS=Schizosaccharomyces p... [more]
RS28_KLUMA2.085e-1369.6440S ribosomal protein S28 OS=Kluyveromyces marxian... [more]
RS28_ASHGO2.723e-1369.6440S ribosomal protein S28 OS=Ashbya gossypii GN=RP... [more]
RS28_KLULA3.556e-1376.6040S ribosomal protein S28 OS=Kluyveromyces lactis ... [more]
RS28_NEUCR7.921e-1366.6740S ribosomal protein S28 OS=Neurospora crassa GN=... [more]
RS28B_YEAST7.921e-1367.8640S ribosomal protein S28-B OS=Saccharomyces cerev... [more]
RS28_CAEEL1.351e-1277.0840S ribosomal protein S28 OS=Caenorhabditis elegan... [more]
RS28A_YEAST1.351e-1274.4740S ribosomal protein S28-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7C07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7C07-E13-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046328 ID=CX046328; Name=CX046328; organism=Citrus sinensis; type=EST; length=215bp
CAAAGTGAGGATATCACCTTCTCTAACGGGTCCCTTCACATTCCTCATGA
TGAATCGGTTCTGATCATCTAAAAACTTGACTCTCACTTGAGTAACCTGT
CCTCTTGAACCAGTGCGGCCCATGACTTTCACCACCACAGCGTGCTTAAT
CTGAGAATCCATTCTGAGCGAAGAGGCGAGAAGAGAGAGAAGGTGACAGA
AGCGGCTGCTAATTT
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