CX046328
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_BOVIN (40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -3 Query: 1 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 150 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTL 58
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_OSTOS (40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13 Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = -3 Query: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDILTL 162 MD +K A V K +GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGDILTL Sbjct: 1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDILTL 55
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.085e-13 Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -3 Query: 1 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDS +K A V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DIL L Sbjct: 1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVL 57
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_KLUMA (40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.085e-13 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -3 Query: 1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDS+ + A V+KV+GRTGSRG VTQVRV+FL+D R I+RNVKGPVREGDIL L Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVL 56
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_ASHGO (40S ribosomal protein S28 OS=Ashbya gossypii GN=RPS28A PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.723e-13 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -3 Query: 1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDS+ + A V+KV+GRTGSRG VTQVRV+FLDD +R I+RNVKGPVRE DIL L Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDILVL 56
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_KLULA (40S ribosomal protein S28 OS=Kluyveromyces lactis GN=RPS28 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.556e-13 Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 Query: 1 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 141 A V+KV+GRTGSRG VTQVRV+FL+D R I+RNVKGPVREGDIL L Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVL 56
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_NEUCR (40S ribosomal protein S28 OS=Neurospora crassa GN=rps-28 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 7.921e-13 Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = -3 Query: 1 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDS +K V +V+GRTGSRG VTQVRV+F+DDQ R I+RNVKGPVRE DIL L Sbjct: 1 MDSSKAPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILVL 57
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28B_YEAST (40S ribosomal protein S28-B OS=Saccharomyces cerevisiae GN=RPS28B PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 7.921e-13 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = -3 Query: 1 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 162 MDS+ + A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL L Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVL 56
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28_CAEEL (40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12 Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -3 Query: 1 AVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDILTL 141 A V KV+GRTGS+GQ TQVRV+F++DQ NR I+RNVKGPVREGDILTL Sbjct: 7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTL 54
BLAST of CX046328 vs. ExPASy Swiss-Prot
Match: RS28A_YEAST (40S ribosomal protein S28-A OS=Saccharomyces cerevisiae GN=RPS28A PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3 Query: 1 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 141 A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL L Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVL 56 The following BLAST results are available for this feature:
BLAST of CX046328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046328 ID=CX046328; Name=CX046328; organism=Citrus sinensis; type=EST; length=215bpback to top |