CX046317

Overview
NameCX046317
Unique NameCX046317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.083e-30
Identity = 76/271 (28.04%), Postives = 134/271 (49.45%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---STVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 805
            E+CD L+GF  CH              +  I E+YP  ++ +FSV       D VV PYN+ L++ +L+      +V DN AL DI      +   +  D+N +IS++MS  T  LRFP  L + L  L ++L P    HF M  + PL        R+  + ++ +++   +N+M     + G+Y++    F+G +S  E++E +    ++  + FV W    +K   + V  +   G +M+   + N+TSI+  F+ + + F  MF+++
Sbjct:  124 EHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKEN-PDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKR 392          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 75/271 (27.68%), Postives = 133/271 (49.08%), Query Frame = 2
Query:   20 QGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKA 808
            +GFQ+ H              +  + + Y  +++ T+SVFPS + S+ VV+PYN  L++ +L++N+D  ++ DN+AL ++  R L+ S  S+   N LI++ MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ ++ L+  ++   ++D  N M   D     YL      +G +   +V   ++  Q +    F  W P ++   +    P      S ++      N++SI  +F++    F  +F+R A
Sbjct:  135 EGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGA 402          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.183e-25
Identity = 62/183 (33.88%), Postives = 99/183 (54.10%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG--FAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADP 544
            +  D L+GF + H              + ++ + +P +++ T+SVFP+ +  D VV+PYN+ LS+ +L +NAD  +VLDN AL  I    L + TPSF   N L+S  MS  T  LR+P   ++DL  +  +LIP PR HF M    F+      ++  R  TV ++ +++   KN M + +P
Sbjct:   62 DGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNP 244          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.442e-25
Identity = 73/275 (26.55%), Postives = 138/275 (50.18%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP-LTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASA-MFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN--NVKSTVCDIPPT-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            E CD L+ F + H              + +I+EE+P +++ T+S+FP+  + SD VV+PYN+ L++H+L+EN+D  +V+DN +L      +L++ TP+F  +N LIS  M+  T  +RFPG +    + +   L+P   L F +  + P +    S+  R  T  ++ +++   K  +   +    + + +   +  G   + EV   ++   +K    FV W+P   NV    C    T   +++   + NST    +  ++S QF  + +++A
Sbjct:  120 EGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSGLSLTNSTGASLILSKISGQFDKLRKQRA 394          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 70/277 (25.27%), Postives = 127/277 (45.85%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNS--SYFVEWIPNNVKSTVCDIPPTGLK---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L E+AD  ++ DN AL ++  RT +    S+   N LIS+ +S +T  LRFP  + + +  +   LIP P LHF    F P T     G Q+Y+  T  ++   + D  N +         +    +   G++    +   +  +Q + +  S+    +  N+      +PP   +   ++   + N+++I  +F R +  F  +F + A
Sbjct:  129 DSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSLVTQRSDMVTHFNVFSTVIGEVDQNHILRALPKMQQRLNMPSWSTSALNVNIGRRSPYLPPLESRENSVSGLMLSNTSAITSVFERSASAFDKLFYKGA 404          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.768e-21
Identity = 46/55 (83.64%), Postives = 53/55 (96.36%), Query Frame = 2
Query:  644 SYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            SYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKA
Sbjct:    1 SYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 55          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.309e-21
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 421
            + C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+       P+P +H
Sbjct:   66 DQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 69/275 (25.09%), Postives = 128/275 (46.55%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPR---HGRYLTASAMFRGKMSTKEV--DEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            EN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+EN D  +VLDN AL+ +     K  TP+F  +N L++  MS  T   RF   +   +R L  +L PFP +HF     +P+        R  +V ++T+ +    +MM +   R   +   L+A    +G++    +   EQ ++   +   +++      + + +        K++   + NSTS+  +F  +  ++  +  ++A
Sbjct:  129 ENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASRVRPNDCMLSAYMFLQGQIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPLFESLLSKYDKLRSKRA 401          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20
Identity = 63/278 (22.66%), Postives = 123/278 (44.24%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNV------KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            ++ D  +GFQ+ H              +  + + YP +++ T+SVFP+ + S+ VV+ YN  L++ +L+E++D  +V DN +L +I  +  +         N LIS  +S VT  +RFP  + S +  +   LIP P LHF    F P TS        ++  +  ++   + D  N + +    +  Y        G +  +++   M  +Q +    F  W  + +      +S    + P   +++   + N +++  +F      F  +F + A
Sbjct:  128 DSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQRIK--FPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGA 402          
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 70/280 (25.00%), Postives = 126/280 (45.00%), Query Frame = 2
Query:    2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLSTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808
            + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +   +Q++  L   ++  ++ + +                + +    +  +E+ + ++  Q + S  FV W+  +V        P      +    + N+TS+ ++F ++ +QF  + +RKA
Sbjct:  154 DKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFS---TQKHNYLNEYDMLLELSNDRYKTNRVGGDTSYISMLNYLIGYNLDQREIRKGILKSQQRIS--FVPWVARSVLVVHGKKSPYLKNTNLEGIQVTNNTSMIDVFTKILKQFDLLIKRKA 428          
The following BLAST results are available for this feature:
BLAST of CX046317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TBG_ENTHI2.083e-3028.04Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_ASHGO1.143e-2827.68Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG_COCHE1.183e-2533.88Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_ENCCU3.442e-2526.55Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_CANGA1.224e-2225.27Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBB_LYMST1.768e-2183.64Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]
TBA4B_HUMAN2.309e-2135.37Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_CAEEL3.938e-2125.09Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_YEAST1.146e-2022.66Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_CANAL2.920e-1625.00Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7C01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7C01-E1-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046317 ID=CX046317; Name=CX046317; organism=Citrus sinensis; type=EST; length=809bp
CGAGAACTGCGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTCTGGGAG
GAGGGACAGGTTCCGGGATGGGAACTTTGTTGATATCAAAGATAAGAGAG
GAATACCCGGATAGAATGATGCTTACTTTCTCAGTTTTCCCATCTCCTAA
GGTCTCTGATACTGTTGTTGAGCCTTACAACGCTACTCTCTCTGTACATC
AGCTAGTTGAAAATGCAGATGAGTGTATGGTTCTTGATAATGAAGCCCTT
TACGACATCTGTTTCCGCACTCTCAAACTCAGCACTCCAAGCTTTGGTGA
TCTGAATCATTTGATATCTGCTACAATGTCTGGAGTTACCTGTTGTTTGA
GATTCCCTGGTCAATTAAACTCTGACCTTAGAAAGCTTGCTGTTAATCTC
ATTCCTTTTCCTAGGCTTCACTTTTTCATGGTGGGATTTGCTCCCTTGAC
ATCCCGTGGCTCTCAGCAATATAGATCTTTGACTGTCCCGGAGCTCACCC
AGCAAATGTGGGATGCTAAGAATATGATGTGTGCAGCTGATCCTCGCCAT
GGTCGTTACTTGACTGCCTCAGCCATGTTTAGGGGCAAAATGAGCACTAA
AGAAGTTGATGAGCAGATGATCAATGTGCAGAACAAGAACTCTTCTTACT
TTGTGGAATGGATTCCCAATAATGTGAAATCAACTGTTTGTGATATCCCT
CCAACTGGCCTGAAAATGGCATCAACATTTATTGGAAACTCGACCTCAAT
TCAGGAGATGTTCAGGCGTGTGAGCGAGCAGTTCACAGCTATGTTTAGGA
GGAAGGCTT
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