CX046317
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.083e-30 Identity = 76/271 (28.04%), Postives = 134/271 (49.45%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---STVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 805 E+CD L+GF CH + I E+YP ++ +FSV D VV PYN+ L++ +L+ +V DN AL DI + + D+N +IS++MS T LRFP L + L L ++L P HF M + PL R+ + ++ +++ +N+M + G+Y++ F+G +S E++E + ++ + FV W +K + V + G +M+ + N+TSI+ F+ + + F MF+++ Sbjct: 124 EHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKEN-PDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKR 392
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28 Identity = 75/271 (27.68%), Postives = 133/271 (49.08%), Query Frame = 2 Query: 20 QGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKA 808 +GFQ+ H + + + Y +++ T+SVFPS + S+ VV+PYN L++ +L++N+D ++ DN+AL ++ R L+ S S+ N LI++ MS VT LRFP + + L + L+P P LHF F P TS G++ ++ L+ ++ ++D N M D YL +G + +V ++ Q + F W P ++ + P S ++ N++SI +F++ F +F+R A Sbjct: 135 EGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGA 402
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 1.183e-25 Identity = 62/183 (33.88%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG--FAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADP 544 + D L+GF + H + ++ + +P +++ T+SVFP+ + D VV+PYN+ LS+ +L +NAD +VLDN AL I L + TPSF N L+S MS T LR+P ++DL + +LIP PR HF M F+ ++ R TV ++ +++ KN M + +P Sbjct: 62 DGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNP 244
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.442e-25 Identity = 73/275 (26.55%), Postives = 138/275 (50.18%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP-LTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASA-MFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN--NVKSTVCDIPPT-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 E CD L+ F + H + +I+EE+P +++ T+S+FP+ + SD VV+PYN+ L++H+L+EN+D +V+DN +L +L++ TP+F +N LIS M+ T +RFPG + + + L+P L F + + P + S+ R T ++ +++ K + + + + + + G + EV ++ +K FV W+P NV C T +++ + NST + ++S QF + +++A Sbjct: 120 EGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYEQTKAQSVVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSGLSLTNSTGASLILSKISGQFDKLRKQRA 394
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22 Identity = 70/277 (25.27%), Postives = 127/277 (45.85%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNS--SYFVEWIPNNVKSTVCDIPPTGLK---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 ++ D +GFQ+ H + + + Y + T+SVFPS K S+ VV PYN L++ +L E+AD ++ DN AL ++ RT + S+ N LIS+ +S +T LRFP + + + + LIP P LHF F P T G Q+Y+ T ++ + D N + + + G++ + + +Q + + S+ + N+ +PP + ++ + N+++I +F R + F +F + A Sbjct: 129 DSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSLVTQRSDMVTHFNVFSTVIGEVDQNHILRALPKMQQRLNMPSWSTSALNVNIGRRSPYLPPLESRENSVSGLMLSNTSAITSVFERSASAFDKLFYKGA 404
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.768e-21 Identity = 46/55 (83.64%), Postives = 53/55 (96.36%), Query Frame = 2 Query: 644 SYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 SYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKA Sbjct: 1 SYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 55
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.309e-21 Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 421 + C LQGF V H + + Y + L FS++P+P+VS +V+PYN+ L+ H +E++D ++DN+A+YDIC L + P++ +LN LIS +S +T LRF G LN DL + NL+ P+P +H Sbjct: 66 DQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21 Identity = 69/275 (25.09%), Postives = 128/275 (46.55%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPR---HGRYLTASAMFRGKMSTKEV--DEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 EN + L G H + ++RE +P +++ T+SVF + S D VV PYN LS+ +L+EN D +VLDN AL+ + K TP+F +N L++ MS T RF + +R L +L PFP +HF +P+ R +V ++T+ + +MM + R + L+A +G++ + EQ ++ + +++ + + + K++ + NSTS+ +F + ++ + ++A Sbjct: 129 ENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASRVRPNDCMLSAYMFLQGQIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPLFESLLSKYDKLRSKRA 401
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20 Identity = 63/278 (22.66%), Postives = 123/278 (44.24%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNV------KSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 ++ D +GFQ+ H + + + YP +++ T+SVFP+ + S+ VV+ YN L++ +L+E++D +V DN +L +I + + N LIS +S VT +RFP + S + + LIP P LHF F P TS ++ + ++ + D N + + + Y G + +++ M +Q + F W + + +S + P +++ + N +++ +F F +F + A Sbjct: 128 DSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQRIK--FPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGA 402
BLAST of CX046317 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16 Identity = 70/280 (25.00%), Postives = 126/280 (45.00%), Query Frame = 2 Query: 2 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLSTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 808 + CD L FQ+ H + I + Y + +L TFS+FPS + SD VV+PYN L++ +L++ +D V N++L +I F DL N LI+ + V+ LRFPG + S + + NLIP P L F AP + +Q++ L ++ ++ + + + + + +E+ + ++ Q + S FV W+ +V P + + N+TS+ ++F ++ +QF + +RKA Sbjct: 154 DKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFS---TQKHNYLNEYDMLLELSNDRYKTNRVGGDTSYISMLNYLIGYNLDQREIRKGILKSQQRIS--FVPWVARSVLVVHGKKSPYLKNTNLEGIQVTNNTSMIDVFTKILKQFDLLIKRKA 428 The following BLAST results are available for this feature:
BLAST of CX046317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046317 ID=CX046317; Name=CX046317; organism=Citrus sinensis; type=EST; length=809bpback to top |