DN618145

Overview
NameDN618145
Unique NameDN618145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of DN618145 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:  398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 550
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
The following BLAST results are available for this feature:
BLAST of DN618145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_PONPY2.752e-2096.08Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY2.752e-2096.08Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG2.752e-2096.08Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR2.752e-2096.08Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA2.752e-2096.08Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE2.752e-2096.08Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE2.752e-2096.08Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA2.752e-2096.08Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU2.752e-2096.08Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN2.752e-2096.08Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618145 ID=DN618145; Name=DN618145; organism=Citrus sinensis; type=EST; length=552bp
ACAAGCACTTCCAAATAGAAAATGATACAATTTGTACAGTATCCAACTAC
ATCAATTCTAATTTCCAATTTTGCTCATTCAACGTGCATATTGATTTATG
ACACCAAAAGGGCTGCCTATGTGTACATAATTGATCAGAGTATTTAGTGT
TTTACACATAGGAGCCACACTGAACCTTCTGAGACTCTAGCACAATTCTT
GCAGCTTCTACAACTACTTGTCCGCTTACATAGTGCTGCCGGCACACAGG
CATGTAGATATCAGACCCACCAATCAATTCCGTCTTTGTCTCCTCAGTCT
TCCTTAAAGTGAAGAAAGACCAATAAAAAAAAAAAGAAAAAGAAACAAAA
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCAGCCTTCCAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAG
GA
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