CX046272

Overview
NameCX046272
Unique NameCX046272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.011e-35
Identity = 76/178 (42.70%), Postives = 118/178 (66.29%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  I+ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:   16 VEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 77/178 (43.26%), Postives = 116/178 (65.17%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  I+ G   +AF++ +++AECLA ELI AA   + S+AI +KD  ERVAKA R
Sbjct:   12 VEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAFKSKRSVAECLATELIGAANRDTKSFAINRKDAKERVAKAAR 185          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METVS (30S ribosomal protein S7P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps7p PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.480e-35
Identity = 83/179 (46.37%), Postives = 116/179 (64.80%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 777
            V V D SL  +I +    +   +PHTAGR S K F K +  +VERL N LM    N GKK   + I++ A+ I+   T +NPIQV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   I+ GA + A ++ K+IA+CLADEL+ A+K     S+A+KKK+E ERVA++ R
Sbjct:   20 VTVKDPSLKSHISL----NPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMATQVNTGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 194          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.642e-35
Identity = 80/179 (44.69%), Postives = 119/179 (66.48%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 777
            + V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  I  G   SA +N K+ A+CLADE++ A+K     S+A++KK+E ERVA++ R
Sbjct:   14 IVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSAHKNKKSAAQCLADEIMFASKADMQRSFAVRKKEEKERVAQSAR 188          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 78/178 (43.82%), Postives = 118/178 (66.29%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V+D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  I TGA  ++F++ K+I  CLADE++ AAK  ++S+AI KK+EIERVA++ R
Sbjct:   11 VEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.793e-34
Identity = 74/178 (41.57%), Postives = 119/178 (66.85%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  I+ G+ ++AF++ ++ AECLA ELI A+   +  ++I +KD  ERVAKA R
Sbjct:   13 VEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 186          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 76/178 (42.70%), Postives = 112/178 (62.92%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ LI  G   ++ +  K +A  LA+ELI AA G    Y++ K++E ERVAK+ R
Sbjct:   21 VTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANALAEELIAAANGDVKCYSVAKREERERVAKSAR 194          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.441e-33
Identity = 77/176 (43.75%), Postives = 108/176 (61.36%), Query Frame = -3
Query:  244 DISLSDYIGVQAAKHATYVP--HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 765
            DI+  +Y      ++ T  P  HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+QA+  +  G    +F+   T AE LA +LI AA     +YA+ +K+E ERVA A R
Sbjct:   31 DITDIEYSDPSTERYITVTPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDDVQTYAVNQKEEKERVAAAAR 206          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 75/178 (42.13%), Postives = 116/178 (65.17%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  I TGA  ++F++ K+I  CLADE++ AA+    S+AI KK+EIERVA++ R
Sbjct:   11 VEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 79/165 (47.88%), Postives = 111/165 (67.27%), Query Frame = -3
Query:  244 VPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 711
            +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  I  G +E+AFR  K++ E LA+ LI AA  ++++ ++KKK+E+ER+A+A+R
Sbjct:   36 LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEEFLAEHLILAANNTTDAPSVKKKNELERIAQASR 199          
The following BLAST results are available for this feature:
BLAST of CX046272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_METAC2.011e-3542.7030S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_METBF3.430e-3543.2630S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_METVS4.480e-3546.3730S ribosomal protein S7P OS=Methanococcus vanniel... [more]
RS7_META37.642e-3544.6930S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_THEVO2.904e-3443.8230S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_METBU3.793e-3441.5730S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_METHJ8.450e-3442.7030S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_HALMA1.441e-3343.7530S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_THEAC1.882e-3342.1330S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_CENSY4.193e-3347.8830S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_6H06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6H06-P12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046272 ID=CX046272; Name=CX046272; organism=Citrus sinensis; type=EST; length=779bp
CACAAACAGCAGAATTTATAAACCATCAAATTCTAGTTTGATTAAGTTGT
GCAGACTCCATCGTAACATCCACCACATGGCATATGGAACCAGTAAGTCA
CTAAATGCATCCTCAATATCATCTACTCAAAACTTGAAACAACATTAGTA
AAATAGCAAAGTAGCAACAAAACATAGTCCAAAAGTTTTTTTTTTTAAAA
AAGTACAACTTTCTGCATCTGCTTCTCCACTATCACGACCTCAGCGATTG
GCCTTTGCCACTCTCTCAATCTCATCCTTCTTCTTGATCGCATAGCTGTT
AGATGAACCCTTGGCAGCATTAATGAGTTCATCGGCCAAGCATTCGGCAA
TAGTCTTGATGTTACGAAAAGCAGATTCACGAGCACCAGTGGTGATTAGA
TAGATCGCTTGATTCACACGGCGCAATGGGGAAATATCCACAGCCTGACG
CCTAACAACACCAGCAGATCCAATACGGGTAGCATCTTCCCTTGGACCAC
TGTTGATGACAGCATCAACAATGACTTGAATTGGGTTCTGGTCGGTCAAA
AGGTGAATGATCTCCATGGCATGCTTAACAATCCTGACGGCCATCAATTT
CTTGCCGTTGTTACGACCGTGCATCATAAGAGAGTTCGTAAGCCTCTCAA
CAATGGGACATTGGGCCTTCCGGAAACGCTTAACTGAGTACCTCCCAGCA
GTGTGAGGCACATAAGTAGCGTGCTTGGCCGCTTGCACGCCAATATAATC
ACTCAACGAGATGTCATTGACCTGAACAT
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