CX046272

Overview
NameCX046272
Unique NameCX046272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 74/178 (41.57%), Postives = 113/178 (63.48%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            +Q++D+ L+ YI +    ++ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  I  GA   +F++   I ECLA+E+I A++   NSYA+ KK+EIERVA + R
Sbjct:   14 IQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEECLANEIILASRNDGNSYAVSKKEEIERVAASAR 187          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 83/170 (48.82%), Postives = 111/170 (65.29%), Query Frame = -3
Query:  244 YVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN-SYAIKKKDEIERVAKANR 714
            Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  I  GA   AFR+ +++AE LA+E+I AA+   N S+AI++K+EIER+A ++R
Sbjct:   39 YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALAEEIIAAAEYDRNRSFAIRRKEEIERIALSSR 208          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 79/178 (44.38%), Postives = 110/178 (61.80%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            +   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  +  GA  ++F+     AE LA++L  AA  +  +YAI +K E ERVA A R
Sbjct:   39 IHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVAAAAR 210          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.033e-31
Identity = 75/178 (42.13%), Postives = 113/178 (63.48%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  I     +S+ ++ K  +  LADELI A+KG +  Y++ KK+E ER+AK+ R
Sbjct:   31 VKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAKSAR 204          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  + A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   26 VVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 82/194 (42.27%), Postives = 111/194 (57.22%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   26 VTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.925e-31
Identity = 82/194 (42.27%), Postives = 109/194 (56.19%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  I  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   26 VTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.925e-31
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            ++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  I  G    +F+    + E LA +LI AA     +Y + +K+E ERVA A R
Sbjct:   32 IEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEEALAHQLIGAANYDLQAYPVSQKEEQERVAAAAR 203          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 72/178 (40.45%), Postives = 110/178 (61.80%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V V D  +  Y+ + +    T VP + GR + ++F K++  IVERL N LM    N GKK+M  ++V  A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+  I     + + +  K     LADELI AAKG +  +++ KK+E+ER+AK+ R
Sbjct:   21 VVVKDAGMVRYVTITS----TEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTALRYIALATWKGSHKTKKPAYLVLADELIMAAKGDAKCFSVGKKEEVERIAKSAR 194          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.695e-31
Identity = 80/194 (41.24%), Postives = 110/194 (56.70%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  + A+ LA+E+I AA     ++A  +K+EIER+A+++R
Sbjct:   26 VTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
The following BLAST results are available for this feature:
BLAST of CX046272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_PICTO5.477e-3341.5730S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_KORCO5.477e-3348.8230S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_HALSA9.342e-3344.3830S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_METB61.033e-3142.1330S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_THEON1.349e-3142.2730S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_THEGJ1.349e-3142.2730S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_PYRKO3.925e-3142.2730S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_NATPD3.925e-3141.5730S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_METLZ5.126e-3140.4530S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_THECE6.695e-3141.2430S ribosomal protein S7P OS=Thermococcus celer GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_6H06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6H06-P12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046272 ID=CX046272; Name=CX046272; organism=Citrus sinensis; type=EST; length=779bp
CACAAACAGCAGAATTTATAAACCATCAAATTCTAGTTTGATTAAGTTGT
GCAGACTCCATCGTAACATCCACCACATGGCATATGGAACCAGTAAGTCA
CTAAATGCATCCTCAATATCATCTACTCAAAACTTGAAACAACATTAGTA
AAATAGCAAAGTAGCAACAAAACATAGTCCAAAAGTTTTTTTTTTTAAAA
AAGTACAACTTTCTGCATCTGCTTCTCCACTATCACGACCTCAGCGATTG
GCCTTTGCCACTCTCTCAATCTCATCCTTCTTCTTGATCGCATAGCTGTT
AGATGAACCCTTGGCAGCATTAATGAGTTCATCGGCCAAGCATTCGGCAA
TAGTCTTGATGTTACGAAAAGCAGATTCACGAGCACCAGTGGTGATTAGA
TAGATCGCTTGATTCACACGGCGCAATGGGGAAATATCCACAGCCTGACG
CCTAACAACACCAGCAGATCCAATACGGGTAGCATCTTCCCTTGGACCAC
TGTTGATGACAGCATCAACAATGACTTGAATTGGGTTCTGGTCGGTCAAA
AGGTGAATGATCTCCATGGCATGCTTAACAATCCTGACGGCCATCAATTT
CTTGCCGTTGTTACGACCGTGCATCATAAGAGAGTTCGTAAGCCTCTCAA
CAATGGGACATTGGGCCTTCCGGAAACGCTTAACTGAGTACCTCCCAGCA
GTGTGAGGCACATAAGTAGCGTGCTTGGCCGCTTGCACGCCAATATAATC
ACTCAACGAGATGTCATTGACCTGAACAT
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