CX046272

Overview
NameCX046272
Unique NameCX046272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.744e-31
Identity = 74/178 (41.57%), Postives = 110/178 (61.80%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  I  G   ++F++     E LA++L  AA     +YA+ +K+E ERVA A R
Sbjct:   32 IEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYDVQTYAVNQKEEKERVAAAAR 203          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.948e-30
Identity = 81/194 (41.75%), Postives = 110/194 (56.70%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  I  GA    +RN  + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   26 VEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.402e-30
Identity = 81/194 (41.75%), Postives = 109/194 (56.19%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  I  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   29 VEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.402e-30
Identity = 69/176 (39.20%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  244 DISLSDYIGVQAAKHATYVP--HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 765
            D+S  +Y      ++ T  P  HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  I  G +  ++++ ++ A+ LA  +I AA     SYA+ +K+E ERVA+A R
Sbjct:   52 DVSEIEYEDPSTQRYITVTPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQVIIGAANYDVQSYAVGQKEESERVAEAAR 227          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 80/194 (41.24%), Postives = 109/194 (56.19%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  I  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   26 VEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26
Identity = 76/189 (40.21%), Postives = 103/189 (54.50%), Query Frame = -3
Query:  244 VQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 777
            V V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA   + +   +I E LA+E+INA   S  SYAIK+K EIE+ A++ R
Sbjct:   14 VTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGAFHGSRKKPISIEEALAEEIINAYNNSLKSYAIKRKLEIEKTAESAR 198          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_RHOPB (30S ribosomal protein S7 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = -3
Query:  244 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 705
            H+A +  V    K    I+ +  NS+M  G    KK +A  IV  A+EII   T Q P+ V   A+ N  P  +       G   +  V++  +RR    I  + + AR+   RN KT+ E L+ EL++A+ G  N  A+KK++++ R+A+ANR
Sbjct:    5 HSAEKREVNPDPKFGNVILTKFMNSVMYAG----KKSVAEGIVYGALEIIEAKTKQGPLPVFEQALENVMPTIEVRSRRVGGATYQVPVEVRSVRRQALGIRWLISAARD---RNEKTMTERLSAELLDASNGRGN--AVKKREDVHRMAEANR 149          
BLAST of CX046272 vs. ExPASy Swiss-Prot
Match: RS7_AZOC5 (30S ribosomal protein S7 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = -3
Query:  244 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 705
            H A R  V    K    IV R  NS+M     +GKK +A  IV  A++++      NP+ + V A+ N  P  +       G   +  V++   RR   AI  +   AR    RN KT+ E L+ EL++AA    N  A+KK+++  R+A+ANR
Sbjct:    5 HKAERREVIPDAKFGNIIVSRFMNSIM----RDGKKSVAESIVYGALDVVEAKAKSNPLDLFVTALENVAPAVEVRSRRVGGATYQVPVEVRTERRQTLAIRWLIASARA---RNEKTMVERLSAELLDAANNRGN--AVKKREDTHRMAEANR 149          
The following BLAST results are available for this feature:
BLAST of CX046272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_HALMO8.744e-3141.5730S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_PYRFU1.948e-3041.7530S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_PYRHO7.402e-3041.7530S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_HALWD7.402e-3039.2030S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_PYRAB9.668e-3041.2430S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_NANEQ1.307e-2640.2130S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_RHOPB7.696e-1133.1230S ribosomal protein S7 OS=Rhodopseudomonas palus... [more]
RS7_AZOC57.696e-1133.1230S ribosomal protein S7 OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_6H06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6H06-P12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046272 ID=CX046272; Name=CX046272; organism=Citrus sinensis; type=EST; length=779bp
CACAAACAGCAGAATTTATAAACCATCAAATTCTAGTTTGATTAAGTTGT
GCAGACTCCATCGTAACATCCACCACATGGCATATGGAACCAGTAAGTCA
CTAAATGCATCCTCAATATCATCTACTCAAAACTTGAAACAACATTAGTA
AAATAGCAAAGTAGCAACAAAACATAGTCCAAAAGTTTTTTTTTTTAAAA
AAGTACAACTTTCTGCATCTGCTTCTCCACTATCACGACCTCAGCGATTG
GCCTTTGCCACTCTCTCAATCTCATCCTTCTTCTTGATCGCATAGCTGTT
AGATGAACCCTTGGCAGCATTAATGAGTTCATCGGCCAAGCATTCGGCAA
TAGTCTTGATGTTACGAAAAGCAGATTCACGAGCACCAGTGGTGATTAGA
TAGATCGCTTGATTCACACGGCGCAATGGGGAAATATCCACAGCCTGACG
CCTAACAACACCAGCAGATCCAATACGGGTAGCATCTTCCCTTGGACCAC
TGTTGATGACAGCATCAACAATGACTTGAATTGGGTTCTGGTCGGTCAAA
AGGTGAATGATCTCCATGGCATGCTTAACAATCCTGACGGCCATCAATTT
CTTGCCGTTGTTACGACCGTGCATCATAAGAGAGTTCGTAAGCCTCTCAA
CAATGGGACATTGGGCCTTCCGGAAACGCTTAACTGAGTACCTCCCAGCA
GTGTGAGGCACATAAGTAGCGTGCTTGGCCGCTTGCACGCCAATATAATC
ACTCAACGAGATGTCATTGACCTGAACAT
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