DN618095

Overview
NameDN618095
Unique NameDN618095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.899e-29
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  315 PNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNRENYINELIRRM 623
            PN K+VRELIYKRG+GK++KQRI L+DN+IIE ALGK+ I+ +EDLIHEI TVGP+FK+A NFLWPF           ++  H++EGGDAG R+ +IN L+++M
Sbjct:  146 PNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.100e-28
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  315 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGK-FGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRM 626
            YPNLKSVRELIYKRG+ K ++QR+ +TDN +IE+ L +   I C+EDL+HEI TVGP+FK A+NFLWPF           K NHYV GGD GNRE+ IN L+R+M
Sbjct:  147 YPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  315 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRM 626
            YP+   ++ LIYKRGY K++ QRI +T+N++IE+ LGK GI  +EDLIHEI TVGPHFKEAN FLW F           KR  ++  GD GNRE+ IN+L++RM
Sbjct:  144 YPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  315 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRM 626
            YP+   ++ LIYKRGY K++ QRI +T+N++IE+ LGK GI  +EDLIHEI TVGPHFKEAN FLW F           KR  ++  GD GNRE+ IN+L++RM
Sbjct:  144 YPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = -3
Query:  318 PNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNRENYINELIRR 623
            PNL SVRELIYKRG+GK++ QRIAL+DN++IE+ALGK+ +I +ED+IHEI  VG HFKE   FLWPF           K+  H+ EG  AG     INELI++
Sbjct:  145 PNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.116e-21
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            +PNLKSVRELI KRG  K++ + + LTDN++IE+ LG+FG+IC+EDLIHEI   G HF+E ++FL PF           +     E G  G R + IN+LIR++N
Sbjct:  142 FPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            +PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLIHEI   G HF+E + FL PF           +     E G  G R   IN+LIR++N
Sbjct:  142 FPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            +PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLIHEI   G HF+E + FL PF           +     E G  G R   IN+LIR++N
Sbjct:  142 FPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            +PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLIHEI   G +F+  + FL PF           +     E G  G R   IN+LIR++N
Sbjct:  143 FPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNH-YVEGGDAGNRENYINELIRRMN 626
            YPN KSV++LIYK+G   ++   + LTDN+IIE+ALG+  I+ +EDL++EI  VG HF+E   FL P            ++   + EGGD GNRE+ IN+LI +MN
Sbjct:  142 YPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
The following BLAST results are available for this feature:
BLAST of DN618095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL7B_SCHPO1.899e-2958.6560S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL7_DROME2.100e-2859.0560S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL72_PARTE3.352e-2653.8560S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE3.352e-2653.8560S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO3.137e-2455.3460S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL7L_MOUSE1.116e-2148.5760S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN5.538e-2150.4860S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PONAB7.233e-2150.4860S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_PIG1.044e-1948.5760S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]
RL71_ARATH6.770e-1946.2360S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618095 ID=DN618095; Name=DN618095; organism=Citrus sinensis; type=EST; length=628bp
CCCCCTTTTTTTTTTTTTTGCGTTACAAAATAGCACAATATTATATGCAA
TCATGAGGCCTTCATGCTTTTGAAAATCTGGACATACATAAAAAATTATG
AACTAACCCTCGAATCCGAAGCAGAATAAAATTTCCAAATAACATCTCAT
GATCCATTGTTTAAAACAAAAACTGTTTCCACATTCAAAGGGGGAACTAA
AATTTTGATTGCTTCGGTACCAACAATATCTTAGCATAAGAACCTCAAAA
CTCTTAAATAATGAAACACCTCAAAACTCTAAATAATCATCAAAATAATG
CGAACTGCCTAGTTCATTCTTCTGATCAGCTCATTGATGTAGTTCTCACG
GTTTCCAGCATCACCACCCTCGACATAGTGGTTCCTCTTCTTCTTCAGGC
CACCCAATGGTGCCTTAAGCTTAAATGGCCATAAAAAGTTGTTAGCCTCC
TTAAAATGAGGTCCCACTGTCATAATCTCATGGATCAGGTCTTCCATGCA
GATGATACCGAACTTGCCCAAAGCCTTCTCAATAATCGAGTTATCAGTCA
AAGCAATTCTCTGCTTATCTAGCTTTCCATATCCCCTCTTGTAAATGAGC
TCCCTAACACTCTTCAAATTGGGGTATC
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