CX046166

Overview
NameCX046166
Unique NameCX046166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +++++EL++++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +++++EL++++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 53/148 (35.81%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 586
            +S  + K+L D+++ P    SAG V + D++ W+  ++GP D+ Y GG F   + FP DYP KPPK+ F ++++HPNI+  G++C+ IL             +E+W P  T+  +LLS+ S+LTDPN + P   + A M + + A+++
Sbjct:    4 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.616e-23
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  182 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +   R+ +E K  ++D P    A P        D+ +W+  I G   + + GG++ +T+ FP +YP +PPK  F   +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K DK +YE   R+  ++ A
Sbjct:    4 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.616e-23
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 574
            KR+  EL  L        SA P  +++F W+ TI G  D+ + G  + +++ F  DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++ + +
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +++++EL++++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +++++EL++++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  182 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKSDKAKYESTARSWTQK 613
            M S  +L E K+L  +P          +++  W   + GP D+ Y GG+F   I FPP YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:    1 MVSSFLLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKK 157          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +++++EL++++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  182 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +A  R+ +E K  +KD P    A P        ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
The following BLAST results are available for this feature:
BLAST of CX046166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2S_DROSE2.003e-2337.76Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME2.003e-2337.76Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC7_CAEEL2.003e-2335.81Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC9_SCHPO2.616e-2335.95SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC20_ARATH2.616e-2341.41Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2S_DROYA3.416e-2338.46Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER3.416e-2338.46Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBC_ASFM23.416e-2336.94Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_DROAN4.462e-2337.76Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC9_XENTR4.462e-2335.95SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_6C01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6C01-F2-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046166 ID=CX046166; Name=CX046166; organism=Citrus sinensis; type=EST; length=843bp
TGAAGAACAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCT
TGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCT
CCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGT
AGTTTCAATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTT
TGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCT
GGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCC
TTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTC
CTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTC
TTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAA
AGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCT
GCTCCTTGCTTACTGATCCAAATCCTGACGACCCTCTTGTACCGGAGATT
GCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAG
CTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAA
AAAGGAACACATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTC
TTTAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGG
GAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTTG
AAGCTCCTTTGATGGAATGTAGTTAATGGCTTAAGTACTTCCT
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