CX046166

Overview
NameCX046166
Unique NameCX046166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKA 577
            KR+ +EL  L        SA P ++++F W  TI G + + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILK++WS    +  +LLSI SLL +PN D PL    A ++K+  A
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  182 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 616
            +A  R+ +E K  +KD P    A P        ++ +W+  I G   +P+ GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI+++ + I  LL +PN  +P   E   +Y  ++ +YE   R+  +K+
Sbjct:    4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFRAQAKKF 155          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  191 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            K++ KELK L + PP         ED     A I GP  +PY  G+F + +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W+P+L +  VL  +  LL +P P+  L  +   M   +  +Y   AR +T  +A
Sbjct:   13 KQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHA 155          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 565
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 565
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 565
            + K ++ ELK LQ++P        V E D+++W+  I GP ++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 574
            + K +L ELK LQ++P        V E D+++W+  I GP ++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+  K
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  185 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 574
            + K +L ELK LQ++P        V E D+++W+  I GP ++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+  K
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  191 KRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 619
            +RI  E   +  D      S     V E++F W+  I GP +S Y    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  PNP+DP   E+A +Y++DK  Y+   R + + ++
Sbjct:    7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of CX046166 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 2
Query:  182 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 616
            ++S R+ +E K+ ++D P    A P        +++ W   I G + + + GGV+ + + F  DYP KPPK  F    FHPN+  +G++CL IL E+  W P++TI  VLL I  LL +PNP  P      H++ ++K +Y+   ++ ++ Y
Sbjct:    4 ISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
The following BLAST results are available for this feature:
BLAST of CX046166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2C_MOUSE3.197e-2138.76Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC9_MESAU4.176e-2133.55SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC22_ARATH5.454e-2137.06Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UB2R2_RABIT5.454e-2136.17Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE5.454e-2136.17Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN5.454e-2136.17Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2R1_MOUSE5.454e-2136.11Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN5.454e-2136.11Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC1_MIMIV7.123e-2136.05Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC9_DICDI1.215e-2033.55Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_6C01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-6C01-F2-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046166 ID=CX046166; Name=CX046166; organism=Citrus sinensis; type=EST; length=843bp
TGAAGAACAACGAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCT
TGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCT
CCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGT
AGTTTCAATTTTAATAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTT
TGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCT
GGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCC
TTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTC
CTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTC
TTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAA
AGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCT
GCTCCTTGCTTACTGATCCAAATCCTGACGACCCTCTTGTACCGGAGATT
GCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAG
CTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAA
AAAGGAACACATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTC
TTTAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGG
GAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTTG
AAGCTCCTTTGATGGAATGTAGTTAATGGCTTAAGTACTTCCT
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